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LOCUS NM_078514 3194 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_078514 VERSION NM_078514.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3194) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3194) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3194) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3194) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3194) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3194) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3194) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3194) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3194) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3194) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3194) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3194) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3194) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3194) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3194) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3194) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3194) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3194) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3194) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3194) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3194) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3194) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3194) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_078514.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3194 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3194 /gene="brk" /locus_tag="Dmel_CG9653" /gene_synonym="Brk; BRK; CG9653; Dm brk; Dmel\CG9653; ssg-1" /note="brinker" /map="7B1-7B1" /db_xref="FLYBASE:FBgn0024250" /db_xref="GeneID:31665" CDS 535..2649 /gene="brk" /locus_tag="Dmel_CG9653" /gene_synonym="Brk; BRK; CG9653; Dm brk; Dmel\CG9653; ssg-1" /note="CG9653 gene product from transcript CG9653-RA; CG9653-PA; brk-PA; small salivary glands-1" /codon_start=1 /product="brinker" /protein_id="NP_511069.3" /db_xref="FLYBASE:FBpp0071007" /db_xref="GeneID:31665" /db_xref="FLYBASE:FBgn0024250" /translation="MDSSSEQLNGSGALNFKRPKDSSENATNSHTNNGNSSGSPKMGS RRIFTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLRSSVANNQ QQQQQQQQQQQQQQQQQQLLPQQSVSPTPAVKVFHQLSHPLVHQLHHHHAAAVGHHHH HAAHHHAAHHHHAAAAAAAAAAAAAAAAAHHHAAHHLLAANGMVPHPLAAHPHLHVPV AMHPQMQHQKEQQQQQQQLQQEQQQQDQQQSQQETPATIATNGSNQGSSNVLSAAKIA AVVAAAMATSNGNPTPTATIPASSSSSSNTLPSSNNSSCHNSSSSSNSCNSNQVPIQV PILSGSPGSTSSASHIPHVPFAYHHNLHGYLENRLEAVATPAPMDLSLGSSARRQMQL HEKDPSGVDLTFRKRKVITSPMQPDKISKLEEVIKKEPETETENEDVEVDVETEQPEE HKLPSKQVKLFKPYLLDDDEEQDHHHHHHHHRQEDLDEGAAEEEQDDEEESRYADDDE VDSKEAADKKQRRLKKKPSAINEQREPIIWSNHPYPGGCVSPGSSITSSFQCPTSMQQ QQTFPVAGGSPNQQFQDNCSSSKATTPLSPFSAPALSPTGFCCPKGSPVSGYESSSST YSDSGSNYSLNLQLHAVYNDNLMYMQQQQQQQQQQHHLQHQQHLQRWLDQESLATART SSVNRPLILVADTAPTNLTLVA" misc_feature 661..834 /gene="brk" /locus_tag="Dmel_CG9653" /gene_synonym="Brk; BRK; CG9653; Dm brk; Dmel\CG9653; ssg-1" /note="Brinker DNA-binding domain; Region: BrkDBD; pfam09607" /db_xref="CDD:462838" ORIGIN 1 aacaattgtg ttttggattc cttgccgtgc ggatcgcaaa cgcgagttat gagaagagcg 61 tagtaaaacg tacgagaagt agctaacaag aaaaggaaaa gagcagaaga agcaacagca 121 cgcagacata tatttttttt aactgtgttt tatttatccg atctatacca atcgaaatat 181 acacaactat atagatttga aacggatttt gaaaagtgct ttcaaataaa ctccaaaaag 241 tatcagagcg agtgtgtgcc agtgtgtgta tgtgagacgc gtcgcagtcg acgtcgctgc 301 tttggggaca gagctgccag atcgcgagtt atgaaagcgc aagcgtcgca cgcaagtagc 361 aacaacagct acaacaaaag cacctaaaac ttactaccta ctactactgc aaaacacact 421 tgtttgacta ttatttcgct acattaaaat caacaaaaat acacacaaaa ctgaccagaa 481 tcttgggaaa ataaaaacaa tctttaaaga acgccacgaa aataaaccat aatcatggat 541 agcagcagcg aacagttgaa cggatcggga gctttgaatt tcaagcggcc caaggattct 601 tcggagaatg ccacaaacag ccacacaaat aatggcaatt cttcgggcag ccccaaaatg 661 ggaagtcgtc ggattttcac gccccacttt aagctgcaag tcctcgaatc atacaggaat 721 gataatgatt gcaagggcaa tcaacgggcc acggccagga aatacaacat tcaccgccgg 781 caaatccaaa aatggttgca atgcgagtca aatttgcgat catcggtggc caacaatcag 841 caacagcagc agcagcagca acagcaacag cagcaacaac agcagcagca gcaactactc 901 ccacagcaat cggtatcgcc gacaccggcg gtcaaggtgt tccatcagct gagccatccg 961 ctggtgcacc agttgcatca ccatcacgcc gccgcggtgg gtcatcatca tcatcatgcc 1021 gcccaccatc atgccgccca tcatcatcac gctgcagcag cagcggcggc agcagcagcg 1081 gcagcagcag cagcagcagc ccaccatcat gccgcccacc atttgctggc agccaatggc 1141 atggttccac accccctggc cgcccatccc cacttgcatg tcccggtggc aatgcatcct 1201 caaatgcagc atcagaagga gcaacagcag cagcagcagc agttgcagca ggagcagcag 1261 caacaggatc agcagcagtc acagcaggag acacctgcaa ccattgctac caatggcagc 1321 aatcagggat cctcgaatgt cctttcggcg gccaaaatag ccgctgttgt tgccgccgcc 1381 atggccacca gcaatggcaa tcccacaccg acagcaacaa tccccgccag cagcagcagc 1441 agcagcaaca cattgccgag cagcaataac agtagttgcc acaacagcag cagcagcagc 1501 aatagctgca acagcaacca agtgccaata caagtgccaa tcctgagcgg atcccctggg 1561 tccacatcgt cagccagtca cattccacat gtgccctttg cctaccatca caatctgcat 1621 ggctatttgg agaatcgact ggaggcggtt gccacaccag cccccatgga cctctctctc 1681 ggatcctctg cccgccgtca aatgcagttg cacgaaaagg atccatctgg tgtggatctc 1741 actttccgca aacgtaaggt catcactagt ccgatgcagc cggataagat tagtaagctg 1801 gaggaggtga tcaagaagga gcccgaaacg gaaacggaga acgaggatgt ggaggtggac 1861 gtggagacgg agcagccgga ggagcacaag ctgccctcta aacaggtcaa gctatttaag 1921 ccctatttgc tggacgatga tgaggagcag gatcatcatc atcatcacca tcaccatcgg 1981 caggaggatt tggatgaggg agctgccgag gaggagcagg acgacgagga agagtcccgc 2041 tatgccgacg atgatgaggt ggactccaag gaggcggccg acaagaaaca gcgtcgcctc 2101 aagaaaaagc catcggcaat caacgaacaa agggaaccca tcatctggag caaccatccg 2161 tatcccggtg gctgtgtatc gcccggcagt tcgatcacca gcagctttca gtgccccacc 2221 agtatgcaac agcagcagac atttcccgtc gccggcggga gtcctaatca gcaatttcag 2281 gacaactgca gctccagcaa agccaccacg cccctcagcc cattctcggc gcccgccctc 2341 tcgcccaccg gcttctgttg ccccaaagga tcgcccgttt ccggttacga gagcagctca 2401 tccacctaca gcgacagcgg cagcaactac agcctcaatc tccagctgca tgccgtctac 2461 aacgacaatc tgatgtacat gcaacagcag cagcagcagc agcaacagca gcatcacctg 2521 caacatcagc agcacctgca gcgctggctg gatcaggagt ccttggccac tgcgaggaca 2581 tcatccgtca accgaccact gattctcgtg gcggatactg cgcccacaaa cctgaccctg 2641 gtggcctaag aacacacaca cacacacaca cacacacaca cacaacaaac aacacacaca 2701 atagaaacta aggaagcagc aatcccacca atcggatgtt ataatggcag tcactgggcc 2761 tggcctttta gttccctaag ccatatttaa gcttaataac gtttttttta gccctaccac 2821 ctaagtttac cttaataaaa aattgtatat ctaagcgcaa acatatatct tccaagcata 2881 tcagcaaaaa aaaccccaaa ccctaggtat aaacccttct tttttttttg gttacacact 2941 aagaacaaat taagcttaag ttcagatttt tctttttttt tttcttgtat tagcttgtgt 3001 aaataattgt gtacaaaaag tgaaacaagg cgaaacaatt gaatttgctt aagaatttca 3061 acgcttcatt tcatttgtat aacttgtggg agagtatttt aagagagaaa atgtgaaaaa 3121 tgcaactgga aaaactgaga aaattgttaa gagtaaagct ttaaaaacga aacaaataca 3181 cacctttaca atac