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LOCUS NM_078489 1448 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_078489 VERSION NM_078489.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1448) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1448) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1448) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1448) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1448) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1448) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1448) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1448) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1448) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1448) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1448) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1448) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1448) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1448) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1448) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1448) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1448) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1448) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1448) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1448) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1448) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1448) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1448) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_078489.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1448 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1448 /gene="Cdk7" /locus_tag="Dmel_CG3319" /gene_synonym="CD 7; cdk-7; cdk7; CDK7; CG3319; dCdk7; Dmcdk7; DmCdk7; DmCDK7; Dmel\CG3319; DmMo15; DmMO15; Mo15; p40[MO15]" /note="Cyclin-dependent kinase 7" /map="4F4-4F4" /db_xref="FLYBASE:FBgn0263237" /db_xref="GeneID:31441" CDS 90..1151 /gene="Cdk7" /locus_tag="Dmel_CG3319" /gene_synonym="CD 7; cdk-7; cdk7; CDK7; CG3319; dCdk7; Dmcdk7; DmCdk7; DmCDK7; Dmel\CG3319; DmMo15; DmMO15; Mo15; p40[MO15]" /EC_number="2.7.11.1" /EC_number="2.7.11.22" /EC_number="2.7.11.23" /note="CG3319 gene product from transcript CG3319-RA; CG3319-PA; Cdk7-PA; Mo15" /codon_start=1 /product="Cyclin-dependent kinase 7" /protein_id="NP_511044.1" /db_xref="FLYBASE:FBpp0070723" /db_xref="GeneID:31441" /db_xref="FLYBASE:FBgn0263237" /translation="MLPNANDKTERYAKLSFLGEGQFATVYKARDTVTNQIVAVKKIK KGSREDARDGINRTALREIKILQELQHENIIGLVDVFGQLSNVSLVFDFMDTDLEVII KDNKIILTQANIKAYAIMTLKGLEYLHLNWILHRDLKPNNLLVNSDGILKIGDFGLAK SFGSPNRIYTHHVVTRWYRSPELLFGARQYGTGVDMWAVGCILAELMLRVPFMPGDSD LDQLTRIFSTLGTPTEAEWPHLSKLHDYLQFRNFPGTPLDNIFTAAGNDLIHLMQRLF AMNPLRRVSCREALSMPYFANKPAPTVGPKLPMPSAILAAKEGANPQTGDTKPALKRK LVETTVRGNGLAQKKRLQF" misc_feature 120..1013 /gene="Cdk7" /locus_tag="Dmel_CG3319" /gene_synonym="CD 7; cdk-7; cdk7; CDK7; CG3319; dCdk7; Dmcdk7; DmCdk7; DmCDK7; Dmel\CG3319; DmMo15; DmMO15; Mo15; p40[MO15]" /note="Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7; Region: STKc_CDK7; cd07841" /db_xref="CDD:270833" misc_feature order(141..152,156..161,165..167,204..206,210..212, 270..272,312..314,360..371,378..380,384..389,498..500, 504..506,510..515,519..521,552..554,561..563,567..569, 597..599,603..614,618..620,732..737) /gene="Cdk7" /locus_tag="Dmel_CG3319" /gene_synonym="CD 7; cdk-7; cdk7; CDK7; CG3319; dCdk7; Dmcdk7; DmCdk7; DmCDK7; Dmel\CG3319; DmMo15; DmMO15; Mo15; p40[MO15]" /note="active site" /db_xref="CDD:270833" misc_feature order(141..143,147..161,165..167,204..206,210..212, 312..314,360..371,510..515,567..569) /gene="Cdk7" /locus_tag="Dmel_CG3319" /gene_synonym="CD 7; cdk-7; cdk7; CDK7; CG3319; dCdk7; Dmcdk7; DmCdk7; DmCDK7; Dmel\CG3319; DmMo15; DmMO15; Mo15; p40[MO15]" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270833" misc_feature order(246..254,258..260,267..272,276..281,288..293, 327..329,333..335,348..350,465..467,474..485,567..569, 573..584,594..599,930..932,942..950) /gene="Cdk7" /locus_tag="Dmel_CG3319" /gene_synonym="CD 7; cdk-7; cdk7; CDK7; CG3319; dCdk7; Dmcdk7; DmCdk7; DmCDK7; Dmel\CG3319; DmMo15; DmMO15; Mo15; p40[MO15]" /note="CDK/cyclin interface [polypeptide binding]; other site" /db_xref="CDD:270833" misc_feature order(270..272,384..386,498..500,504..506,561..563, 597..599,603..614,618..620,732..737) /gene="Cdk7" /locus_tag="Dmel_CG3319" /gene_synonym="CD 7; cdk-7; cdk7; CDK7; CG3319; dCdk7; Dmcdk7; DmCdk7; DmCDK7; Dmel\CG3319; DmMo15; DmMO15; Mo15; p40[MO15]" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270833" misc_feature order(549..584,588..620) /gene="Cdk7" /locus_tag="Dmel_CG3319" /gene_synonym="CD 7; cdk-7; cdk7; CDK7; CG3319; dCdk7; Dmcdk7; DmCdk7; DmCDK7; Dmel\CG3319; DmMo15; DmMO15; Mo15; p40[MO15]" /note="activation loop (A-loop); other site" /db_xref="CDD:270833" ORIGIN 1 ccatcgatag cgtttgcgaa cttgaattgt tttgattcgg cctcgcagca tttcagtcat 61 tttcgtgcta tttatgaggc tcctaaacga tgctgcccaa tgcgaatgac aaaacggaac 121 gctatgccaa gctatccttc ctcggcgagg gtcagtttgc cacagtttac aaggcgcgcg 181 acacggtgac caaccaaatt gtggccgtaa agaagatcaa gaagggatcg cgcgaggatg 241 cacgcgacgg tatcaacagg acagcgctgc gtgagatcaa gatattgcag gagctgcagc 301 acgagaatat cattggcttg gtggacgttt tcggtcaact ttcgaatgtc tcgctggttt 361 tcgacttcat ggacacggat ctggaggtga tcatcaagga taacaagatt atattaacgc 421 aggcgaacat caaggcctat gccatcatga cgctaaaggg tctggagtat ttgcatctca 481 attggatact gcaccgcgat ttgaagccca acaatttgct ggtcaacagc gatggcatcc 541 taaagattgg cgatttcggt ttggccaagt ccttcggttc gcccaatcgc atttacacgc 601 accacgtggt cacacgctgg tatcgttcgc ccgaattgct ctttggcgcc cgacaatatg 661 gcaccggtgt ggatatgtgg gcagttggct gcattttggc tgaacttatg ctgcgagtgc 721 cgttcatgcc gggcgattcg gatctggatc agctgacacg gatcttttcc acactgggaa 781 cacccacgga agctgaatgg ccgcatttga gcaaactgca cgactatctg cagtttcgca 841 actttccggg cacaccattg gacaatatat tcaccgccgc gggcaatgac ttgatccatc 901 tgatgcaacg cctgtttgcc atgaatccgc tgcggcgtgt gtcctgccgc gaggcactga 961 gcatgccgta tttcgctaac aaaccggcgc ccacagtggg tcccaagttg ccaatgccgt 1021 cggccattct ggccgccaag gagggcgcca atccgcagac cggcgacacg aagcctgcgc 1081 tcaagcgcaa gctggtcgag actacggtga ggggcaatgg attggcccag aagaagcggc 1141 tgcagttcta gcacacacac acacacacac acacacacac acacccacac acactcactc 1201 agttaacaca cactttccat tataacattg atgtttgtga tcgcgttacg ttgttcaccg 1261 cagacatgca caataagttc tattgaaagg cttaaggatg cattgcatcc actccaaaag 1321 ctccactcca ttctaattga tatgaatttt tctcgcttgg caaaaccttt tcgccaccca 1381 acatgagttg ttaagactat gcttaagatg attgaggatg atctattaaa gatgtgattg 1441 aaagcgag