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LOCUS NM_058143 3052 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_058143 VERSION NM_058143.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3052) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3052) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3052) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3052) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3052) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3052) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3052) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3052) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3052) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3052) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3052) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3052) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3052) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3052) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3052) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3052) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3052) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3052) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3052) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3052) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3052) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3052) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3052) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_058143.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3052 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3052 /gene="fs(1)K10" /locus_tag="Dmel_CG3218" /gene_synonym="CG3218; Dmel\CG3218; EG:30B8.5; f(s)K10; fs(1)k10; fs(1)M9; K-10; k10; K10" /note="female sterile (1) K10" /map="2F1-2F2" /db_xref="FLYBASE:FBgn0000810" /db_xref="GeneID:47781" CDS 172..1563 /gene="fs(1)K10" /locus_tag="Dmel_CG3218" /gene_synonym="CG3218; Dmel\CG3218; EG:30B8.5; f(s)K10; fs(1)k10; fs(1)M9; K-10; k10; K10" /note="CG3218 gene product from transcript CG3218-RA; CG3218-PA; fs(1)K10-PA" /codon_start=1 /product="female sterile (1) K10" /protein_id="NP_477491.1" /db_xref="FLYBASE:FBpp0070380" /db_xref="GeneID:47781" /db_xref="FLYBASE:FBgn0000810" /translation="MVSKNQFYQNWTMQSQQQHPHQMQQQFQQQQQPNLQHRNNQSNN NNCNNNPRAAAAPYRKPFRSGKINSGPGGNGNGNRVNGNNQMMFSSSQMPSDPLYIDF SSPPPGFKHNQVGSPKKKSMKGIKQQQHPSPNQQQPPSPNQQQHPSPNQQQHPSPNQQ QHPNSNQQQHLSPNQQQGKMNNQNNNHMNQSQQPFNNQMNGSDWQRHPGNNPNQIRGG FNGFQRGPPPNRPPPRLMMGPPMGPMGPGPRGPGPMGPGGPYPQMPFPPPVPGMRGPG PMGPMGGPPPPPPPLFMRRNGPGPGPMMGVPPPMHMMGPRMPPRGIPPVGPYGPMNMN GGRIMKPNPKLIKQVVKGKSSIKTLKNLINQYPIEKPWVTDEIRSEHDKKVDIENRLK GHKDDELFAQYKGQRDKFVSLYEAAREEYLKQEAATVKAKDAKSDKDKNAISSQSAAP KAGSAKDATIPNP" ORIGIN 1 ctggtatcga aacgttatcg caatcgattc atcgtaatat tttcaatata agtttttgtg 61 acaaataggc gtgcaacatt ttagatccat ctgctccccg cctgtcgttt cggcttggct 121 cctctgctcg agtcctgaac ccccgttttc agtgaaatcc agctacctgc aatggtgtcc 181 aagaaccaat tctatcagaa ctggaccatg cagtcgcagc agcagcaccc gcaccaaatg 241 cagcaacagt ttcagcaaca gcagcagcca aatctgcagc accgcaacaa ccagagcaac 301 aataataatt gcaacaataa tccccgcgca gctgcggctc cgtatagaaa accgtttcgt 361 tcgggcaaaa ttaactccgg accaggagga aatgggaatg gtaacagggt caacggtaac 421 aatcagatga tgttttcctc cagccaaatg ccgagcgatc ccctgtacat tgacttcagc 481 agcccgccac caggattcaa acacaatcag gtaggcagtc ccaagaagaa gtctatgaag 541 ggcatcaaac agcagcagca tcccagtccg aaccagcagc agcctcccag tccgaaccag 601 cagcagcatc ccagtccgaa ccagcagcag catcccagtc cgaaccagca gcagcatccc 661 aattcgaacc agcagcagca tctcagtccg aaccagcagc agggcaagat gaacaaccag 721 aacaacaatc atatgaacca gtcgcagcag cccttcaaca atcagatgaa cggaagcgat 781 tggcagcgcc atccgggcaa caatcccaat cagattcgcg gtggctttaa tggattccaa 841 cgcgggccgc ctccgaaccg tcctcctcca cgcctcatga tgggtccgcc aatgggtccg 901 atgggccccg gaccacgggg acccggaccg atgggccctg gaggacctta cccgcaaatg 961 cctttcccgc caccggtgcc tggtatgcgc ggtcccggac ccatgggccc catgggtgga 1021 ccaccaccgc cgccgccacc gctctttatg cgtcgcaacg gacccggtcc aggtcctatg 1081 atgggtgtcc caccgcccat gcacatgatg ggtccacgga tgccgccgcg gggaattcca 1141 ccggtcggac cttatggacc aatgaacatg aatggcggcc ggataatgaa gcccaatccc 1201 aagctaatca agcaggtggt gaaaggcaag agcagcataa agacactaaa gaacctgatc 1261 aatcagtatc ccatcgaaaa gccctgggta acggacgaga tacgcagcga gcacgacaag 1321 aaggtggaca tcgagaacag attgaagggc cacaaagacg acgagctctt cgctcagtac 1381 aagggccagc gggacaagtt cgttagtctc tacgaagcgg cgcgggaaga gtatctcaag 1441 caggaggcag ccactgtcaa ggccaaggat gccaagtcag acaaagacaa aaacgcaatt 1501 tcaagtcaga gcgcagcccc taaggccgga agcgctaaag atgcaacaat tccaaatccc 1561 taggcagcca atgcaaccga atccgaatac cgaatcaatc gaatcgaacc gactaaagaa 1621 gaggtcggtc gactcacaga actaaatgta aacttaaact ttaaaccaat gagcaattca 1681 aaactaaaac taacagcgag caacagcaag agtctgacaa ttgaagacga atataactca 1741 aaaccccgac tcctatatcg gatatacgta tacacaatcg taatccgagg aggcgccgcc 1801 tttgtcacac gttgcttttg cgactgagaa ctgagcttag aacgataatg tagcaacaaa 1861 tacaaaccca gcgataataa tgtgggcgaa actctagtaa tagcgataaa aatttagatt 1921 gcgaatcgat tcacttgtct aacgtaacct agcgtaacgt aaagtagagt attgaaatgt 1981 aaccgtaacg taacgtaacg taccagtttc ctattcgaaa actatttgtt gttcaattct 2041 aagttgcagc catttcaagt atgtgtacac aatttatgac acgcccttac ctatatatgt 2101 atgcatatat attgatatat atatatatat aaattatttt cctattcgtt gcccgagtgc 2161 gtgggcgcga cataattgaa acagagtggc cggatcctaa gcactctggc ataaatcaca 2221 ctgtaggcct tagattacac cacttgattg tatttttaaa ttaattctta aaaactacaa 2281 attaagatca ctctgtgaac gtgtgctcga tggtgtgcat ctacggattt gtttttgtgt 2341 tctttttccc cacccaaccc cgtccctgac ccaattccgc tgttctcttt accgacttgt 2401 agattaatca cgctcttgat cttcatgacc ggatccacct gacaagtaac gccaaagcag 2461 ccccacttag cggaatagta gagcctaggg gacccaacgt aaaaactcta gtatagcacc 2521 aatctcccaa ccagttaaca ttatacctaa acccatggtc aagagtaaac atttctgcct 2581 ttgaagttga gaacacaatt aagcatcccc tggttaaacc tgacattcat acttgttaat 2641 agcgccataa acatagcacc aatttcgaag aaatcagtta aaagcaatta gcaattagca 2701 attagcaata actctgctga cttcaaaacg agaagagtta caagtatttg taaggcacag 2761 tttatagacc accgacggct cgttagggct cgtcatgtaa ctaagcgcgg tgaaacccaa 2821 ttgaacatat agtggaatta ttattatcaa tggggaatat ttaaccctca ggtagcaaag 2881 taatttaatt gcaaatagag agtcctaaga ctaaataata tatttaaaaa tctggccctt 2941 tgaccttgct tgtcaggtgc atttgggttc aatcgtaagt tgcttctata taaacacttt 3001 ccccatcccc gcaataatga agaataccgc agaataaaga gagatttgca ac