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LOCUS NM_057986 2955 bp mRNA linear INV 26-DEC-2023 variant A (Mct1), mRNA. ACCESSION NM_057986 VERSION NM_057986.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2955) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2955) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2955) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2955) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2955) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2955) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2955) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2955) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2955) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2955) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2955) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2955) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2955) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2955) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2955) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2955) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2955) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2955) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2955) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2955) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2955) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2955) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2955) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_057986.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2955 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2955 /gene="Mct1" /locus_tag="Dmel_CG3456" /gene_synonym="CG3456; Dmel\CG3456; EG:103B4.3; MCT1" /note="Monocarboxylate transporter 1" /map="2E1-2E2" /db_xref="FLYBASE:FBgn0023549" /db_xref="GeneID:31198" CDS 630..2510 /gene="Mct1" /locus_tag="Dmel_CG3456" /gene_synonym="CG3456; Dmel\CG3456; EG:103B4.3; MCT1" /note="CG3456 gene product from transcript CG3456-RA; CG3456-PA; Mct1-PA" /codon_start=1 /product="monocarboxylate transporter 1, isoform A" /protein_id="NP_477334.2" /db_xref="FLYBASE:FBpp0070377" /db_xref="GeneID:31198" /db_xref="FLYBASE:FBgn0023549" /translation="MVHGPPARRKSQQQHEACEMDMERQPTPPDGGWGWVVVFGSFMI HIVTDGMTYSFGIFYNEFLDYFNEGKGYTAWIASIMVGVTFSSGPISSSFVNRYGCRA VTIAGSILAASCIIVSMFAQNVLTLIITIGFGTGLGFGLIYLPAIVSVTQYFEAKRSL ATGIAVCGSGFGTFVFAPLTEFLIGNYGWRGAMLIIGGIVLNCIIFGAMFRPLELEAP PQTPPNTPSTPKLAKKSAIIDQNTTAAELEPLKVLPKDQYLQLPQRTDTAVSGGALCR SNSVGHNLKPNLNNNSNGAVNGQGPTLVTPPQAVVKSTSNDDIARKCHSQLQLTPLRD AHRERSASGTMYRPDALYQGSLHNLPDYVSSRNDLSRSMSGSGVIKRYGSLRQSNNVS QSQEEAKCCGCITCSKETRDTFAEMMNFSLLKDMVFVIFSVSNFCTSIGFNVPYLYVV AYAETLKLTKTDASYLISTIGVANTVGRIILGYISDKPWVNRLLVYNVCLTACGVSTA MVPLCHDFQSLAFYCCVFGFTIGAYVGLTSVILVDLLGLDKLTNAFGLLLLFQGIASF IGPPIGGWMYDLTDSYAPAFLMAGLMIAISGLVMFAIPPLQRLQVRKSERKPHTEHLA LS" misc_feature 729..2441 /gene="Mct1" /locus_tag="Dmel_CG3456" /gene_synonym="CG3456; Dmel\CG3456; EG:103B4.3; MCT1" /note="Monocarboxylate transporter (MCT) family of the Major Facilitator Superfamily of transporters; Region: MFS_MCT_SLC16; cd17352" /db_xref="CDD:340910" misc_feature order(762..767,774..779,786..788,891..893,1140..1145, 1152..1160,1206..1208,1434..1436,1443..1448,1530..1532, 1932..1934,1941..1946,1953..1961,1968..1970,2049..2051, 2061..2063,2214..2219,2229..2231,2241..2243,2289..2291, 2298..2303,2310..2315,2322..2324) /gene="Mct1" /locus_tag="Dmel_CG3456" /gene_synonym="CG3456; Dmel\CG3456; EG:103B4.3; MCT1" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340910" ORIGIN 1 ttaattcgtc gcctgccctg ctgacagcga catcggttgc gtctcgccaa aaagtaatac 61 tcgctcccgc gatttggaag ccagtgaagc catcgggaaa gggaaagcaa agccgggagt 121 cagtgttaga agcaccatta ttgccgttca gtgtgaccga gtgtgcattc accgcaagga 181 catatcgagt gtggccagtt gctaaggacg ctgtacgtca agcaccgcag tcaaagtgcg 241 acgcgatcga aatcgcattc attcagtttt attgaacact cgacgccccg ttcaatccgt 301 aatctcgacg attggacaac tgcaattgta acgcgaagaa cacaaactgt caacaaagtc 361 gtaaattcgc acactgcggc agtaaagtga agcaatcgaa gggaaaaaag ccaaagagtg 421 caggcagcaa caagttaatt accaaataac aggcgaaagt tgctgcaaca tgagccgctg 481 gctttaagga gcacatccca tcagcaacag caggagaagc agcagcagtt gccacataca 541 ggcagcaagt gcaaccggag aggagaccca atcgcaggtc aaggttcttc cggaaaccaa 601 agcaatcagc ccagggcgac accagcaaca tggtacacgg accgccggct cgcagaaaat 661 cacagcagca gcatgaggcc tgcgagatgg acatggagcg gcagcccaca ccgccagacg 721 gcggatgggg atgggtggtg gtcttcggct ccttcatgat acacatagtt accgatggca 781 tgacctactc ctttggcatc ttctacaatg agttcctgga ctatttcaac gagggcaaag 841 gctacacggc ttggattgcc tccataatgg tgggcgtgac cttctcatcc ggaccgatca 901 gctcgtcgtt cgtaaatcga tatggctgtc gtgcggtgac catagcgggc tccattttgg 961 ccgccagctg catcatcgtg agcatgttcg cccagaatgt cctcacgctg atcattacga 1021 tcggtttcgg aacgggcttg ggctttgggc tcatctacct gccggccatt gtgagtgtga 1081 cgcagtattt cgaagccaag agatctctgg ccacgggaat cgccgtctgc ggctccggat 1141 tcggtacgtt tgtctttgcc ccgctcacgg agttcctgat cggcaactac gggtggcgcg 1201 gtgcgatgct aattatcggc ggcatcgtgc tcaactgcat catctttggg gccatgttcc 1261 gaccgctgga gctagaggca ccgccgcaga cgccgccgaa cacgccgagc actcccaagc 1321 tggccaagaa gtcggccatt atcgatcaga acaccaccgc ggcggagctg gagcccctca 1381 aggtcctgcc taaggatcag tacctgcagc tgccgcagcg cacggataca gcggtctcgg 1441 ggggtgccct ctgccggtcc aacagcgttg gccacaacct caagcccaat ctgaacaaca 1501 actcgaacgg cgccgtcaat ggacagggac ccaccttggt gaccccaccg caggcggtgg 1561 tgaagagcac cagcaacgat gacatcgccc gcaaatgcca cagccagttg cagctgactc 1621 ctctcaggga tgcgcatcgc gagcggagtg ccagtggtac catgtaccga ccggatgctc 1681 tctaccaggg ctccctccac aacctacccg actatgtgag ctccaggaac gatctgagcc 1741 gttccatgtc cggctccggc gttataaagc ggtacggatc ccttcgccag agcaacaacg 1801 tgtcccagag tcaggaggag gccaaatgct gtggctgcat cacttgctcc aaggagaccc 1861 gcgacacatt cgccgaaatg atgaacttct ctctgctcaa ggacatggtg ttcgtgatct 1921 tctccgtgtc taatttctgc acgagcattg gcttcaacgt tccgtacctg tatgtggtcg 1981 cctacgcgga gaccctgaaa ctcaccaaga cggatgccag ctatctgata tccacgattg 2041 gcgtggccaa cacagtgggc cgcataatcc tgggctacat atcggataaa ccgtgggtga 2101 accgcctcct ggtctacaac gtctgcctca ccgcctgcgg agtttccact gccatggtgc 2161 cgctatgcca cgacttccaa tccctggcct tctactgctg cgtctttggc ttcacgatcg 2221 gcgcctatgt gggcctgacc tcggtcattc tggtggacct gttgggactg gacaagctga 2281 ccaacgcctt tggcctgctg ctgctcttcc agggtattgc cagcttcatc ggtccgccca 2341 tcggaggctg gatgtacgac ctgacggact cgtatgcgcc ggccttcctg atggccggac 2401 tcatgatcgc catcagcgga ctggtgatgt tcgccattcc gccgctgcag cgcctgcagg 2461 ttcgcaagtc ggagcgaaag ccccacaccg agcacctggc ccttagttag tagttcaccg 2521 ccacccatcc accacccaca gtgccctgtt tattcctact ccatattttt ttgttttttt 2581 ttctactgta actataaatc tagatacgta ctgatgcaca cgacacttgg ttagattaag 2641 tcctagacct aggccagcca tgtaccgagg tatgcgtgta tgccgcagct atggcatatc 2701 cgaataattg tgtacgggcg actgtcaccg aaccgccggc ttctgtcccc cgagccatga 2761 cctctgaccc cagaccccag acccctgacc cctgacccca gaccccatta aaggccccca 2821 ttgcaagtgc atgcaaatgt atgcctacac gtacatgtac ccataccaaa ttattgttat 2881 tctattatga ctgtatgcct gtgcgtgtgt gtccgtctgt gtatgcgcca ttaaagaaag 2941 cttttgtaca acaac