Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_057903 1613 bp mRNA linear INV 26-DEC-2023 transcript variant D (Dredd), mRNA. ACCESSION NM_057903 VERSION NM_057903.4 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1613) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1613) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1613) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1613) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1613) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1613) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1613) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1613) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1613) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1613) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1613) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1613) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1613) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1613) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1613) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1613) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1613) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1613) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1613) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1613) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1613) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1613) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1613) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_057903.3. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1613 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1613 /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /note="Death related ced-3/Nedd2-like caspase" /map="1B12-1B13" /db_xref="FLYBASE:FBgn0020381" /db_xref="GeneID:31011" CDS 63..1529 /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /EC_number="3.4.22.-" /note="CG7486 gene product from transcript CG7486-RD; CG7486-PD; Dredd-PD; death-related ced-3/neural precursor cell expressed developmentally downregulated 2 (NEDD2)-like protein; Ced-3-like/Nedd2-like protein; death caspase-2; drosophila caspase; death related ced-3/Nedd2-like protein" /codon_start=1 /product="death related ced-3/Nedd2-like caspase, isoform D" /protein_id="NP_477251.3" /db_xref="FLYBASE:FBpp0113051" /db_xref="GeneID:31011" /db_xref="FLYBASE:FBgn0020381" /translation="MAGSNLLIHLDTIDQNDLIYVERDMNFAQKVGLCFLLYGDDHSD ATYILQKLLAMTRSDFPQSDLLIKFAKSRPETWRRHLVEALCIIGARKVLRRLGFCWQ ELRMHYLPHIAGITLHVHPLLKSLYRMCEELSLVQSGRLLLDVREKVESQQAGDPLRF YDPAYLEIFLLDWLTRRSIKLGDINAAGSDVQLLVGHLKSNGLQAQANLLKDTIISNA PEPDAAGTAAMAVKQEIESDNQQSYCSTQIDALKLTRENAGIALIINQQKFHRNKFLS PDPLRRRDGTDVDKERLIEVFSSMGYNVEAYDNVDHMGIIERIRSACDRSLVRDSLVV FILSHGFEEAVYASNSIAMKITDIEDLLCSYDTLYYKPKLLIIQACQEKLVHKKKPNE LFRIDVTTVSPDQHIDMLRAMSTVNGYAALRHTQTGSWFIGSLCDAIDRRSASEHIAD ILTIVTNEVSKKRGSNDESMVPNVKSTFRQHVYFPPRL" misc_feature 816..1520 /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /note="Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Region: CASc; smart00115" /db_xref="CDD:214521" misc_feature order(909..911,1080..1082,1194..1196,1215..1217, 1320..1337,1347..1352) /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /note="substrate pocket [chemical binding]; other site" /db_xref="CDD:237997" misc_feature order(1077..1079,1200..1202) /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /note="active site" /db_xref="CDD:237997" misc_feature order(1218..1220,1275..1280,1299..1301,1308..1310, 1317..1319,1386..1388,1410..1412,1428..1430,1467..1469, 1482..1487,1491..1493,1500..1505) /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:237997" misc_feature order(1221..1223,1272..1274) /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /note="proteolytic cleavage site [active]" /db_xref="CDD:237997" ORIGIN 1 cagcgagtgc aatttatcgg ccatttccta aagtgaaaca tttttgtata ttcccgatcg 61 ccatggccgg atcaaacctg ttgattcatc tagacaccat cgatcagaac gatctgatct 121 acgtggaacg tgacatgaac tttgcccaaa aggtgggcct ctgctttctg ctttatggcg 181 acgaccactc ggatgccacc tacattctgc agaaactttt ggccatgaca cgatcagact 241 tcccgcaaag tgatctactc ataaagttcg ccaagtcccg gccagaaacc tggagaagac 301 atctcgtgga ggccctgtgc attattgggg cccgcaaggt gctccggaga ctgggtttct 361 gctggcagga gctgcgaatg cactacttgc cgcatatcgc tgggatcacg ctgcatgtcc 421 atcctctgtt gaagagcctc tacaggatgt gtgaggagtt gtcgttggtg cagagtggcc 481 gcttgctcct agatgttcgc gaaaaggtgg agagccagca ggcaggagat ccacttcgct 541 tctacgatcc cgcgtacctg gagatctttt tgctggactg gctgaccaga aggagcataa 601 agttagggga cataaatgcc gcaggcagcg atgttcagct gctggtcggc catttgaagt 661 ccaacggtct gcaggcgcaa gcaaatttgc tcaaagacac catcattagt aacgctccgg 721 agccagatgc ggctggcact gctgcgatgg cagtcaagca agagattgaa tcggataacc 781 agcagtcgta ctgttccaca caaatagatg ctcttaagtt gacccgggag aacgcaggaa 841 tcgccttgat tatcaaccag cagaagtttc accggaataa atttctgtcg cccgacccac 901 tgcgtagacg ggatggcacg gatgtggata aagaacgact aatcgaggtg ttttcctcga 961 tgggatacaa tgtggaggcg tacgacaacg tggatcacat gggcatcata gagcgcattc 1021 gcagtgcgtg cgatagatcg ctcgtgcgcg attccctagt ggtcttcatc ctgagccacg 1081 gcttcgagga ggccgtctac gcatccaaca gcatcgccat gaagatcacg gatatcgagg 1141 acttgctctg cagctacgac accctgtact acaaaccgaa gttgctaatc atacaagcct 1201 gccaggagaa gcttgtccat aaaaagaagc caaatgagct ctttaggata gacgtgacca 1261 ccgtgtcgcc ggaccagcac atcgacatgc tgcgggccat gtccacggta aatggatatg 1321 ctgctctgcg ccacacccaa acaggtagct ggtttatcgg gagcctgtgc gatgccatcg 1381 atcgccgttc cgccagtgaa cacatcgccg atatcctgac gattgtcacc aacgaagtgt 1441 ctaaaaagcg aggcagtaat gacgagtcca tggtgccgaa tgttaaaagc acatttcgcc 1501 agcacgtgta ctttccacct cgtctgtgat tttggttttt aacgttagcg cagttgtacg 1561 tccactcaaa ttgctctata aaggtaaaaa tacattttta taaagtttag tgt