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LOCUS NM_001382017 2850 bp mRNA linear INV 26-DEC-2023 G (CG12065), mRNA. ACCESSION NM_001382017 VERSION NM_001382017.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2850) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2850) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2850) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2850) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2850) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2850) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2850) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2850) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2850) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2850) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2850) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2850) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2850) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2850) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2850) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2850) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2850) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2850) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2850) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2850) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2850) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2850) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2850) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2850 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2850 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /map="7F5-7F7" /db_xref="FLYBASE:FBgn0030052" /db_xref="GeneID:31798" CDS 369..2489 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /note="CG12065 gene product from transcript CG12065-RG; CG12065-PG" /codon_start=1 /product="uncharacterized protein, isoform G" /protein_id="NP_001368976.1" /db_xref="FLYBASE:FBpp0428081" /db_xref="GeneID:31798" /db_xref="FLYBASE:FBgn0030052" /translation="MSERRSHIQMAPPPPPPKPNKSQTANGNGIGNGTGIGTGTGNGT LPNGNKNYNKIVAVQDQEPLAQNSSGVQRSQSPPRTEQVVMTPRGKTANSTVILIERK LVDEINDRVHVAGGDHTGIIINKDTVAGQKSASKAAALSLEFRVFLVSANTGKHSQES RTLRFWFRDWLTNEEKQAHIAQDFFKELVSPQDFPRDYVGFIKKIMKLLQHGYSEIQS IEIELRILEETSAPPSRPPRDGYIIYCYGDCNRKFEEALMAQRKTGDGDNLMKAIWLD MYTEQLISLEESQFESPPLTQEKVLELIEQAYPNPVSPEDLAKDYGWSEQDVLLVIKS LQERGLIKSMEYNAYTRIHHEDKEIKVVKQMPTIASNKQPTIAIITAQYCEKLAVDAM LENKETFVRYTTVDSDPNLTNSLRKSKKKRRFGESNVYTLGNIGAHRIVSTKLPSVGS NREAMTATGNTTTRLLGTFQKVDYVFIVGVAGGVPHYTDYKKHVRLGDVVISYVDKQR ALISNSKEKPYVYLYKSGEDVKTYFPVNDSLQQIAESLQANMQVKRPWEDYLNQAQQA LAQKTDADFNRPDARTDKLFMNIGNNEVIEVAHPIAADEVDGVNRLRLHLGPIGSGRD LVRSDELRTQFARKYGLLATDVEMSSVLDSIIGNCRESFILVKGIADYKDGTSTRKWQ NFAAISAASVVKSVICGMDAPTNV" misc_feature 1236..>1394 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /note="Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain [General function prediction only]; Region: COG2512" /db_xref="CDD:442002" misc_feature 1491..2459 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /note="Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB [Nucleotide transport and metabolism, Coenzyme transport and metabolism]; Region: MtnN; COG0775" /db_xref="CDD:440538" ORIGIN 1 tcagttgaaa agcgaacttt gaacaaaacg gactttgaaa agggtttcca tccatcaaca 61 tctatccccg tgttttcatt ttgtttttgc cggcattttg gctagtggaa taaacgaagc 121 aaaccagcaa ggaaaacata aaacaaatta agcaaataat agtgaccgaa aagggagaac 181 cggttgcaaa tcaagtggca aataaaacac gtcatttgtt cgtttgtttg atccagcaac 241 agcaccagca gcagcaagtt tgggctcaag gacgtcgccg gagcagcggt atcgtatcgg 301 atcgaaggag cagcagttcc agcaccaagg aacaggagga gcaaggcgga gcaactagca 361 ccagcaccat gtcggagcgc aggagtcaca tacagatggc gccgccaccg ccgcccccca 421 agccaaacaa atcgcagaca gccaatggaa atggtattgg gaacggcaca ggcataggaa 481 cgggcactgg caacggaacc ctgccgaatg gcaataaaaa ctataacaaa attgtcgcag 541 tccaagacca ggagccgctg gctcagaact cgagcggcgt tcaaaggagc cagtcgccac 601 cacgcacaga acaggttgtg atgacgccac gcggtaaaac ggccaacagt acggtgatcc 661 tcatcgaacg caaactggtc gatgagatca atgatcgcgt tcatgtcgcc ggcggtgatc 721 atacgggcat catcattaac aaggacacgg tcgccggaca gaagagcgcc agcaaggcgg 781 cagcgctatc gctggaattc cgcgtctttc tggtcagcgc caatacgggc aagcattcgc 841 aggagtcgcg caccctgcgc ttctggttcc gcgactggct gaccaacgag gagaagcagg 901 cgcacatagc ccaggacttc ttcaaggagc tggtcagtcc gcaggacttt cccagagact 961 acgtgggctt catcaagaag ataatgaagc tcctgcagca cggatactcg gagatccagt 1021 cgatcgagat tgagctgcgc atcctggagg agacatccgc accaccctcg cgaccacccc 1081 gggatgggta catcatctac tgctacggcg actgcaaccg aaagttcgag gaggcgctga 1141 tggcgcagcg aaagacaggt gacggcgaca atctgatgaa ggccatttgg ctggacatgt 1201 acaccgagca gctgatttcg ctcgaggaat cgcagttcga atcaccgccg ttgactcagg 1261 agaaggtgct ggagctcatc gagcaggcat atcccaatcc cgtgtccccc gaggatctgg 1321 ccaaggatta cggctggagc gagcaggatg tgctgctggt gatcaagtca ctgcaggagc 1381 gcggtctgat caagtcgatg gagtacaatg cgtacactcg catccatcac gaggacaagg 1441 agattaaggt ggtcaagcag atgcccacga tcgcctccaa caagcagccc accattgcca 1501 tcatcacggc gcaatattgc gagaagctcg ccgtggacgc aatgctcgag aacaaggaga 1561 cattcgtccg atacaccaca gtcgattccg atcccaatct aacgaactca ctcagaaagt 1621 ccaaaaagaa acgaagattc ggcgaatcga atgtgtatac tctgggcaat atcggggcgc 1681 acaggatcgt gagcaccaag ctcccgtcgg tgggcagcaa tcgggaggcg atgacggcga 1741 cgggcaatac cacaacccgt ctgttgggca cattccaaaa ggtcgactat gttttcatcg 1801 tgggcgtagc cggtggcgtt ccccactaca cggactataa gaagcacgtg cgactgggcg 1861 atgtggtcat ctcgtatgtg gacaaacagc gggcactgat cagcaatagc aaggagaaac 1921 cgtacgtgta cttgtacaag agcggcgagg acgtgaagac ctacttcccg gtgaacgatt 1981 cgctgcagca gatcgccgag agcctgcagg ccaacatgca ggtgaagcgg ccgtgggagg 2041 actacctgaa ccaggcccaa caggcgttgg cccagaagac ggatgccgac ttcaaccggc 2101 cggacgcgcg gacggacaaa ctgtttatga acattggaaa taacgaggtg atcgaggtgg 2161 cccatcccat tgccgccgac gaggtggacg gtgtcaatcg gttgcgactc catctgggtc 2221 ccattggatc cggaagggat ctggtgagga gcgacgagct gcgcacccag ttcgccagga 2281 agtacggcct actggccacc gatgtggaga tgagcagcgt gctggacagc atcattggca 2341 attgcagaga gagctttata ctggtgaagg gcatcgctga ctacaaggac ggcacgtcca 2401 ccaggaagtg gcaaaacttc gctgccattt cggcggcgtc ggtggttaag tcggttatct 2461 gcggcatgga cgcgcccacg aatgtatagg aggcggggct tcgaataccc catttcctcc 2521 attacacccc aacccccccg cccacccctt ccctgcaatc gtagcatttg atttgcctcc 2581 aattttcgta ccaatcccgc tgcggcgtcc ctttattttt ttgtggccag acacatgggg 2641 accactattc gtaaaccaaa atgtgcatag attgcatcat atataatgta tgttcgcgta 2701 atattgtatt aaatgatttc ttgttattta ttttgttata acttttgtac tacaatcaat 2761 ctaatttaca cacaaacact tgacgtatat aaaaacacat atatacaaca gtaaataaat 2821 atcgcaacta agcttgcaaa aactaagaat