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LOCUS NM_001316627 3493 bp mRNA linear INV 26-DEC-2023 variant C, mRNA. ACCESSION NM_001316627 VERSION NM_001316627.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3493) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3493) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3493) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3493) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3493) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3493) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3493) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3493) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3493) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3493) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3493) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3493) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3493) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3493) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3493) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3493) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3493) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3493) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3493) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3493) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3493) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3493) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3493) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3493 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3493 /gene="l(1)G0289" /locus_tag="Dmel_CG2221" /gene_synonym="CG2221; Dmel\CG2221; Mgn1457" /note="lethal (1) G0289" /map="9B7-9B12" /db_xref="FLYBASE:FBgn0028331" /db_xref="GeneID:31964" CDS 63..1940 /gene="l(1)G0289" /locus_tag="Dmel_CG2221" /gene_synonym="CG2221; Dmel\CG2221; Mgn1457" /note="CG2221 gene product from transcript CG2221-RC; CG2221-PC; l(1)G0289-PC; lethal (1) G0289" /codon_start=1 /product="lethal (1) G0289, isoform C" /protein_id="NP_001303556.1" /db_xref="FLYBASE:FBpp0312441" /db_xref="GeneID:31964" /db_xref="FLYBASE:FBgn0028331" /translation="MAKSVGSACAQIAILLAITCSASELASAVLHQDTYEIVDTNLPN IAAYGVVPLRTDRLHRQRRTVPVSPPLPAVTTYRGAVSANATAEAGGAAGAGGGVAAE TTVTTVDNKAAGGSVSYNVHNVGVNGTGQRKTYDVAPAVDSNTTSQMAPATKKPTLLG QSGNPKKVASSVVAATMTDPSPAVIDVDVSKVVDVPEEEIEAAVKNASLKESVDFHEY YNSVLYENKDEVASLWTELKATPENIMLSSSHRRAMTVELKFDFPFYGHFVRNITVAT GGFLYTGEYVHSWLAATQYIAPLMANFDTSMSNDSFVRLHDNGTAFTAVWENVTLQDK PDFGKFTFSVTLYQSGDIVFAYMLVPTNINSIQDKEHPVKVGLSDAYIIDKQLFFARR KTIYEYHRVTFQQHEITNNTIIKLAAQPTCLGYNDCNSCINHNTTFTCLWCSVLNRCS TGTDRKKHEWLQMGCEATAIHTSSLCPALGDKGNNAAGQGKNGSANSGASANGATNTS TSSSGSSTPVTEPSVMSTRAPHATAYIKPGVDHSSDIHADGKVGNAELSKAEADNKNV GVAFGFMVPICLVFAVTLWLFYAYRNPHTKSGQLLIQFRPSQWSWRRGEARYTAATIH M" misc_feature 1323..1493 /gene="l(1)G0289" /locus_tag="Dmel_CG2221" /gene_synonym="CG2221; Dmel\CG2221; Mgn1457" /note="Plexin repeat; Region: PSI; pfam01437" /db_xref="CDD:396154" ORIGIN 1 tctagttgct cagcattcgt actttacttt tcactcgcaa cggctgaaat aacggttgaa 61 caatggcgaa gagtgtcggt agtgcgtgcg cgcaaattgc gatccttttg gccatcactt 121 gcagtgcatc ggaacttgcg tcggccgtgt tgcatcagga tacgtacgag atagtggaca 181 caaatctgcc aaatattgcc gcatacggag tagtgccact gagaacggat cgactgcacc 241 gtcaaagacg aaccgtgccc gtatcgccac cgttgcccgc agtcaccaca taccgaggcg 301 cagtgtctgc caatgccact gcggaagcag gaggagcggc aggagctggc ggaggagtgg 361 ctgcagagac cacggtcacc accgtggaca ataaggcagc gggcggtagt gtgtcctaca 421 atgtgcacaa tgtcggagtc aatggcactg gacagcgcaa gacatacgat gtggcaccgg 481 ccgtcgattc caataccact agccaaatgg cgccggctac caagaagccc acactattgg 541 gccagtcggg caatcccaag aaggtggcat cttctgtcgt cgctgcaacc atgacggatc 601 cctcaccggc ggtcatcgat gtggacgtgt cgaaagtagt ggacgtgccc gaggaagaga 661 tcgaggcagc ggtgaagaat gcatcgctga aggagagcgt tgacttccac gaatactaca 721 acagtgtgct ctatgagaac aaggacgagg tggcctcact gtggaccgaa ctgaaggcga 781 cgcccgaaaa tatcatgctt tcgtcgtccc atcgcagggc catgacggtg gagctcaagt 841 ttgatttccc cttctacgga cactttgtgc gcaacatcac ggtggccacc ggcggattcc 901 tttacaccgg cgagtatgtc cactcctggc tggcggccac ccagtacatt gccccgctga 961 tggccaattt cgacacgagc atgtccaacg actcgtttgt ccgattgcat gacaatggaa 1021 ccgccttcac cgccgtgtgg gagaatgtga cgctgcagga caagccggat tttggcaagt 1081 ttacgttcag cgtgaccctg taccagagtg gcgacattgt tttcgcatac atgctggtgc 1141 ccacgaacat caactccatc caggacaagg agcatccggt caaggtcggc ctttccgacg 1201 cctacattat cgacaagcaa ctattctttg cccgccgaaa gacaatctat gagtaccacc 1261 gtgtcacgtt ccagcagcac gagatcacca acaacaccat catcaagctg gcggcacagc 1321 ccacctgcct tggctacaat gactgcaatt cgtgcatcaa ccacaacact acgtttacgt 1381 gcctatggtg ctcggtgctg aatcgctgct ccacgggtac cgaccgcaaa aagcacgagt 1441 ggctccaaat gggatgtgag gctaccgcca ttcataccag tagtttgtgc ccggccctcg 1501 gcgataaggg taacaatgct gccggccagg gtaagaatgg ttctgcgaac agcggtgcca 1561 gtgccaatgg tgcgacaaat acctcaacat catccagcgg ctcatccacg ccggtcacgg 1621 agcccagcgt gatgagtacg agggcaccac atgccaccgc ttacattaag ccgggagtgg 1681 atcactccag tgatatccat gcggacggaa aggtcggcaa tgccgagcta tcgaaggcgg 1741 aagcggacaa caagaatgtg ggcgtagcct ttggcttcat ggtgcccatc tgtctggtgt 1801 tcgccgtgac gctgtggctc ttctacgcgt accgcaatcc gcacaccaag agcggccagc 1861 tgctcatcca gttccgtccc agccagtggt catggaggcg tggcgaggcc cgctacacgg 1921 cggccacgat acacatgtag gaggtgattg ccggagacgc agggtaggag gtacagagat 1981 cgcgagacgt gggagggagc tgcagctata ccgacgatga atcaaccaac aaatcaacca 2041 aacgaattct gatccctgac ggagcagtat cgtgaacgca agggggcact gcgaactgag 2101 aagcaatcgc catcaaatac gattatttta caacatggac atggatcgac cgagcaccga 2161 gcatcaggtg taatcctcct atcttttaaa gacatgaata tttgaaaccc gtctgtaatt 2221 gtgatgtgtt ccatgatgcg tccacaatgt caaccaaaag accatttttt tgaactgatt 2281 gttgagattt agctcagaac gctgccgaaa ccgaacaaaa caacaactaa aaaaagaaat 2341 gaaagcaatt tagaagtgta aagtatagac acaggacctg agttcttgac tcccagtccc 2401 ccggaaccaa ctgctcaata acaacaagaa agacgactgg caacagcatg aagtgatctg 2461 ttaaatgtat ctttttacct tttttaccgt accgcctgcc cattagaaga aaagcaaaaa 2521 agagagagag aaaaaaaatg tataataata atgaataata ccccagaaga caactcaact 2581 attgtataac tctgagacca acggctccca ccaggccacg cacacatcca tacctaaagc 2641 acacacacac acactaacac accaaacaca aacccacaca cacatgagac acccacacac 2701 acagaaacag atagatagac acacacacac acacagatac acagggcaaa gtgctttcaa 2761 ttgtttcata gttcaatttt gtttagtgtt ctttttaact tactctgtat tctccgtact 2821 ctaaaccccc caaaaaagct tgaaaagatg tcgaagaagg gctgtacttt ctatgtatat 2881 gtgtattttt tttgtgtgcg tgcgcgtttt gctggactct tcgctaaaag ttcttcctca 2941 aattgtgtaa ttgtattttc cttctttttt tttttttgat tgatatttgt tcgtacatcg 3001 tatcgtttcg tttcgtttcg tttgtttatt attttaagtg tgtggagctt ggcaagcgat 3061 ttcgagataa atgtattact gcgaacactg agcgcagttt ttcatacact gtattatacg 3121 cgatttgtat gcaagtttta tgtgtgtaaa tgcgtgcagg ggattcagat taatgtgcaa 3181 gcacgcatag cccttatatt atacatatgt atatccaagc caacctcttc tttttgttag 3241 tatttttttt caattaatta atattacaaa tgcagataaa cgagacaagc caaccaagaa 3301 gataaataaa cctataattt atatatatat acacttgatt ataaaatgat aactaaacgc 3361 ggtgtgcaaa gctaaactaa atctataatt aactaagtaa gggagattgg aacaaggaga 3421 ggagatttaa atatgtaata tcgataaaaa ccaattcgtt aaataaaccc caagcatgca 3481 agcgacaaca act