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LOCUS NM_001298287 3138 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001298287 VERSION NM_001298287.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3138) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3138) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3138) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3138) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3138) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3138) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3138) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3138) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3138) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3138) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3138) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3138) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3138) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3138) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3138) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3138) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3138) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3138) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3138) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3138) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3138) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3138) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3138) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3138 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3138 /gene="tth" /locus_tag="Dmel_CG12175" /gene_synonym="anon-EST:fe2G7; CG12175; Dmel\CG12175" /note="toothrin" /map="12A8-12A8" /db_xref="FLYBASE:FBgn0030502" /db_xref="GeneID:32318" CDS 607..1893 /gene="tth" /locus_tag="Dmel_CG12175" /gene_synonym="anon-EST:fe2G7; CG12175; Dmel\CG12175" /note="CG12175 gene product from transcript CG12175-RC; CG12175-PC; tth-PC; anon-fast-evolving-2G7; toothreen" /codon_start=1 /product="toothrin, isoform C" /protein_id="NP_001285216.1" /db_xref="FLYBASE:FBpp0311947" /db_xref="GeneID:32318" /db_xref="FLYBASE:FBgn0030502" /translation="MSSAVNIQIVSMPNLAKIESFLKDVSYRETIEYSANFNTRLCSE RRHRLPFLDPQTGVAQNHSQLFLDKRQRMPGFRQGQIYTYPAARWRKSRRQYLSKMYS RFPERPFQALRKEHEALVASGVNLGLSSLTSGVGSMPGSNSLASSSSLTLNMLTGGGA APAVLGSLHSDTAHDFNGAFSLEESSSLGAAGGDTSDSKDSQQQQHQQHQHQQQAVKE ELLPKEWFYDDMDMNDVDSLEEPKSPADDEYDYDPRYGNKKRRKRRPGKRGGDSGGGG GGGGAGGGGNSGGSSSSRRRSAAARSRITTTDAALDASLEAIESGESVPGSNGGPISS GGILSGSLGAGLAGVSGSGGGGGASGASANSRRSRGAGTRGRRRAKGPNSAVGASCDP TSPGMVIEPPSFESAAAAVGVVEDANAHLRNYRKYL" misc_feature 676..873 /gene="tth" /locus_tag="Dmel_CG12175" /gene_synonym="anon-EST:fe2G7; CG12175; Dmel\CG12175" /note="DPF1-3, N-terminal; Region: DPF1-3_N; pfam14051" /db_xref="CDD:464074" ORIGIN 1 aaccctgtaa cataggcttg taattaaaac tagaaaatac cattacatag ctatgcactg 61 caatgcataa attaactaac agacctatac aggcccttaa attggtaaga aaactgatcg 121 ctaaaattaa agcgaaagag tggatttttt aggacaaaaa taccggtcgg tcgagaacat 181 ttggggggaa aatcatgtcg ccatctggta acactggcat tcagcagagc agtgaaaacg 241 acgttaatat ttctgatcaa ttaaacaatt ggaaaatccg gccgcagatc gcgatctaaa 301 cgtatcgccc tcgccacgcc cactgccgcc cacgccccct ggcgcggggt cacatcgata 361 gagagctttg cgtgtgtgtg tgtgtgcgtg cgtgtatgtg tcggtcgaga ggagaggtgg 421 aagacgaaga agaataaaaa aaacaggcag cgaaaagcga taagaaacgg aacacaacac 481 actggaaaaa aattgcgata agaaacgggg cggagcggag cggaaattgc caagactctg 541 ggatggatta gcggcacagc cggactctga ggttagccaa cagtgggatt aggaccagga 601 acagccatgt cctccgccgt taacatccag atcgtctcta tgccgaatct ggccaagatc 661 gagagcttcc tgaaggatgt cagctaccgg gagacgatcg agtacagtgc caacttcaac 721 acgcgcctgt gcagcgaacg gcgccaccgg ctgcccttcc tcgatccgca gacaggcgtc 781 gcccagaacc actcgcagct cttcctggac aagcgacagc ggatgcccgg cttccggcag 841 ggccagatct acacgtatcc ggcggcccgc tggcggaaga gccgtcgtca gtacttgagc 901 aagatgtaca gccgctttcc cgagcgtccc ttccaggcgc tacgcaagga gcacgaagct 961 ctggtggcca gcggcgtcaa tctgggactg agcagcctga ccagcggtgt gggctccatg 1021 cccggcagca atagcctggc cagcagctcc tccctaacgc tcaatatgct tacgggcggc 1081 ggagccgcgc cggccgtact tggttccctg cacagtgaca ctgcccacga ttttaatgga 1141 gccttcagcc tggaggagtc cagctcgctg ggtgccgccg gcggtgatac atccgacagc 1201 aaggacagtc aacagcaaca acatcagcag caccagcacc agcagcaggc cgtcaaagag 1261 gagcttttgc ccaaggagtg gttctacgat gacatggata tgaacgatgt ggactcgctg 1321 gaggagccca aatcgccggc ggatgatgag tacgattatg atccgcgcta tggtaacaaa 1381 aaaaggcgca agcggcgacc aggcaagcga ggtggagatt ccggcggcgg tggtggtgga 1441 ggaggcgccg gcggtggcgg caattccggc ggtagctcca gctcgcggag acgcagtgca 1501 gcggccaggt cgcgtatcac aacgacggat gcggcgctgg acgcatcgct ggaggccatt 1561 gaatctggcg agagtgtgcc aggcagcaat ggaggaccaa tctccagcgg aggcatccta 1621 agcggcagcc tgggagcagg cttagcggga gtttcgggat ccggcggcgg aggaggagca 1681 tcgggagctt cggccaacag ccgcagatcg cggggagcgg gaacacgtgg caggcgacga 1741 gccaaggggc caaatagcgc cgttggagcg tcttgcgatc cgacaagtcc cggcatggtc 1801 atcgagccac catccttcga gagtgccgct gctgcggtgg gcgtggtcga ggacgcgaac 1861 gcccatctgc gcaactatcg gaagtatctg taaccgctct atcagcaact aactggacgt 1921 gtaatcaatc aaagccttgt ttttcgcaat gttttctcgc ctattgaatc gacctacttt 1981 ttcgcacata atttaaatat agtttttaag ccttagttga tcactgtttg ttgcccccct 2041 ccgacaaaag gataaaagcc aagcaagaaa tgaaagaaag gaaacaaata cattgtggac 2101 cagggacaga aacaggatta gaatcaggat aacgatcaga accgcgcacc aggccgtagc 2161 caatacaatt ccaatgtttc gcctctctta actttacgtt cccatagcca attgattgtt 2221 gttttttaaa ctagcaatgg actggtgaac ttctactata ggataacttg agcggaaact 2281 tatggatgta gcaaatattc ttcgagcaat tttgtaatgt aggaaaccct ttaggccatc 2341 aattattaac gttgtataag ttagacaatg aatttaaaaa gaaccttttt cgtcatcgtt 2401 aggcaattcg taatcaatta ttttcgggca tcatctatgc cataagtgaa acagcacaat 2461 ttgaactatg tatagttttg caatacacga ctatatttca catctggttt ccgaagtttt 2521 gcttagagca gttcgccaga ccattgcatt atattgtaca ttatatatat gggtgtacag 2581 acattatata catatatata tatatacata cttgcatgca ttgtatttgc gactctactt 2641 aaggcaagtc caccttttgg actggctctc cacctaatcg caatctctcg gtttctgttg 2701 ctgcatgttc ttaatactat ttcacctagc tccccacccc tccccacata ttatattcaa 2761 ttttttttat ttaaccaaaa ttttagttaa aaaagagaca attcagattg taatctattt 2821 aggcaagtgg tagggtatct ctagcattag aagaagctaa aagtaaaaac aatttcgtaa 2881 aaccaaaatt ttttctctag gatcataatt attaagctga gctaaaaacg aaaacaaatt 2941 ttaactaact aagaagggac aaaattgaaa taagatcaaa aaaggaaaac atgtacattt 3001 tggaagaaaa atcaaagtcc acaaaatttt aacgaatgag aggcaaaaaa tcagacaaaa 3061 atgaaccaca agagaatgaa aaaaaaaaac aaaaatggaa ataggtttct aagatgtttt 3121 aatatatttt gtaataac