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LOCUS NM_001298245 1940 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001298245 VERSION NM_001298245.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1940) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1940) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1940) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1940) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1940) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1940) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1940) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1940) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1940) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1940) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1940) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1940) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1940) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1940) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1940) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1940) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1940) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1940) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1940) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1940) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1940) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1940) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1940) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1940 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1940 /gene="hec" /locus_tag="Dmel_CG4395" /gene_synonym="anon-WO0170980.1; anon-WO0170980.2; CG4395; Dmel\CG4395; Hec" /note="hector" /map="11D4-11D5" /db_xref="FLYBASE:FBgn0030437" /db_xref="GeneID:32246" CDS 290..1750 /gene="hec" /locus_tag="Dmel_CG4395" /gene_synonym="anon-WO0170980.1; anon-WO0170980.2; CG4395; Dmel\CG4395; Hec" /note="CG4395 gene product from transcript CG4395-RB; CG4395-PB; hec-PB; hector" /codon_start=1 /product="hector, isoform B" /protein_id="NP_001285174.1" /db_xref="FLYBASE:FBpp0310245" /db_xref="GeneID:32246" /db_xref="FLYBASE:FBgn0030437" /translation="MATTSSDSESQNVDVASQAQTQDNLRIFLKHLYAECVFRYQNVT YDTDDPSFSLGPATDYDSDLPENFSPVPRYLENAAMNEGVIDMRNVDEELAEKEELMA TVVSATMATNQKENRLFCPLNFDGYLCWPRTPAGTVLSQYCPDFVEGFNRKFLAHKTC LENGSWYRHPVSNQTWSNYTNCVDYEDLEFRQFINELYVKGYALSLLALLISIIIFLG FKSLRCTRIRIHVHLFASLACTCVAWILWYRLVVERSETIAENPLWCIGLHLVVHYFM LVNYFWMFCEGLHLHLVLVVVFVKDTIVMRWFIVISWFSPIPIAIVYGLARHFSSPDN KHCWITDSLYLWIFSVPITLSLLASFIFLINVLRVIVRKLHPQSAQPAPLAIRKAVRA TIILVPLFGLQHFLLPYRPDAGTQLDHFYQMLSVVLVSLQGFVVSFLFCFANHDVTFA IRTLLNKLLPSLVTPPPAGSNTGQMATTTPSRELGV" misc_feature 641..838 /gene="hec" /locus_tag="Dmel_CG4395" /gene_synonym="anon-WO0170980.1; anon-WO0170980.2; CG4395; Dmel\CG4395; Hec" /note="Hormone receptor domain; Region: HRM; pfam02793" /db_xref="CDD:397086" misc_feature 860..1660 /gene="hec" /locus_tag="Dmel_CG4395" /gene_synonym="anon-WO0170980.1; anon-WO0170980.2; CG4395; Dmel\CG4395; Hec" /note="insect neuropeptide receptor subgroup B4 and related proteins, member of the class B family of seven-transmembrane G protein-coupled receptors; Region: 7tmB1_NPR_B4_insect-like; cd15260" /db_xref="CDD:320388" misc_feature 866..943 /gene="hec" /locus_tag="Dmel_CG4395" /gene_synonym="anon-WO0170980.1; anon-WO0170980.2; CG4395; Dmel\CG4395; Hec" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:320388" misc_feature order(881..883,893..895,1019..1021,1028..1033,1040..1042, 1085..1087,1106..1108,1319..1324,1328..1330,1334..1336, 1499..1501,1508..1510,1553..1555,1565..1567) /gene="hec" /locus_tag="Dmel_CG4395" /gene_synonym="anon-WO0170980.1; anon-WO0170980.2; CG4395; Dmel\CG4395; Hec" /note="putative polypeptide ligand binding pocket [polypeptide binding]; other site" /db_xref="CDD:320388" misc_feature 968..1036 /gene="hec" /locus_tag="Dmel_CG4395" /gene_synonym="anon-WO0170980.1; anon-WO0170980.2; CG4395; Dmel\CG4395; Hec" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320388" misc_feature 1085..1168 /gene="hec" /locus_tag="Dmel_CG4395" /gene_synonym="anon-WO0170980.1; anon-WO0170980.2; CG4395; Dmel\CG4395; Hec" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320388" misc_feature 1202..1264 /gene="hec" /locus_tag="Dmel_CG4395" /gene_synonym="anon-WO0170980.1; anon-WO0170980.2; CG4395; Dmel\CG4395; Hec" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320388" misc_feature 1310..1399 /gene="hec" /locus_tag="Dmel_CG4395" /gene_synonym="anon-WO0170980.1; anon-WO0170980.2; CG4395; Dmel\CG4395; Hec" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320388" misc_feature 1442..1525 /gene="hec" /locus_tag="Dmel_CG4395" /gene_synonym="anon-WO0170980.1; anon-WO0170980.2; CG4395; Dmel\CG4395; Hec" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320388" misc_feature 1544..1621 /gene="hec" /locus_tag="Dmel_CG4395" /gene_synonym="anon-WO0170980.1; anon-WO0170980.2; CG4395; Dmel\CG4395; Hec" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320388" ORIGIN 1 catttgccag cggcacgcgg agcagagcgg tgcgaaaatc ggagtggagc agccaatttt 61 gaataccgat aacataaagc gcattttttg tccgtgtttc taatatatat tttttttttt 121 ttgtgttttt gtgtgctgtt gctgtacgtg acgagcggtg aactgaaacc gaatcaattg 181 tttaagtttt caatgaatgg cagtggcaaa caattgaatg aattcaattg actgtggggc 241 cccattgcat tagccgttga caagagttag tcacgttgaa taacccacaa tggcgacaac 301 ctcttcagat tcggagtcgc aaaatgtgga tgtggcatcg caggcccaaa cgcaggataa 361 tctgcgcata tttttaaagc atttgtatgc ggagtgcgtg ttccgatacc agaatgtcac 421 atacgatacg gacgacccat cattttcact tggcccagca acagactacg attccgattt 481 gccggagaac tttagcccag tgccgcgata tctggagaat gccgcgatga acgagggcgt 541 tattgacatg cgaaacgtgg acgaggagct ggcggagaag gaggagctga tggccaccgt 601 cgtcagtgcc acgatggcca caaatcagaa ggagaaccga ctcttttgcc ccctgaactt 661 tgacggatat ctctgctggc caaggactcc ggccggcact gtgctgagtc aatattgtcc 721 cgatttcgtc gaaggattca acagaaaatt tctggcccac aagacctgcc tggagaacgg 781 ctcctggtac cgtcatccgg ttagcaatca gacctggtcc aattacacca actgcgtgga 841 ctatgaggac ctggagtttc gccagttcat caacgagctg tacgtgaagg gttatgccct 901 ctccctgctg gccctgctca tatcgattat tattttcttg ggcttcaaat ccctgcgctg 961 cacccgcatc cgcatccatg tacatctgtt cgcctcgctg gcctgcacct gtgtggcctg 1021 gatattatgg tatcgtctgg tggtggagcg ttccgaaacc atagccgaaa atccgctgtg 1081 gtgcattggg ctgcatctgg tggtgcacta ctttatgttg gtcaactatt tctggatgtt 1141 ttgcgagggc ctgcacctgc acctggtgct cgttgtggtc tttgtcaagg acacgattgt 1201 gatgcgctgg tttattgtca tcagctggtt ttcacccata cccatagcca tcgtctacgg 1261 tctggccagg catttcagta gtccggacaa taagcactgc tggataactg acagtctcta 1321 cttgtggatc ttctcggtgc ccataactct ttcgctgctg gccagcttta tttttctgat 1381 caacgtactg cgagtgatcg tgcgaaagtt acatccccag tccgcccagc cggcaccgtt 1441 ggccatccgg aaggcggttc gggccaccat tattctggta ccgctgttcg gactgcaaca 1501 cttcctgctg ccctaccgtc cggatgccgg cacccagctg gaccacttct atcagatgct 1561 atcggtggtg ttggtcagcc tgcagggctt tgtggtctcc ttcctgttct gcttcgccaa 1621 tcacgatgtc acctttgcca ttcgcacgct gctgaacaag ttgctgccca gtttagtgac 1681 cccgccgccg gccgggagta atactggaca gatggccacg accacgccca gccgagagtt 1741 gggcgtttaa ggcgtaccgc gcgagggtcg atcgtaacat tgaccgcatc gccgagcaaa 1801 gattttgaag accagtccgg cacacttatt tcatgatagc aaaatatttt tttttataac 1861 ttaattttgt taaaatgcat actgatttca attatttaaa atgttcctgt tatatttttt 1921 atcctgggat actatgcccg