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LOCUS NM_001298234 2406 bp mRNA linear INV 26-DEC-2023 (CkIalpha), mRNA. ACCESSION NM_001298234 VERSION NM_001298234.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2406) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2406) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2406) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2406) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2406) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2406) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2406) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2406) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2406) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2406) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2406) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2406) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2406) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2406) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2406) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2406) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2406) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2406) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2406) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2406) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2406) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2406) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2406) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2406 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2406 /gene="CkIalpha" /locus_tag="Dmel_CG2028" /gene_synonym="anon-WO03040301.93; anon-WO03040301.95; CG2028; CK I; CK1; ck1a; Ck1a; CK1a; ck1alpha; Ck1alpha; CK1alpha; ckI; CKI; CkI alpha; CKI alpha; CkIa; CKIa; ckIalpha; CKIalpha; dmCK1; dmckI; Dmel\CG2028; l(1)G0492; PKA-C" /note="Casein kinase Ialpha" /map="11B7-11B8" /db_xref="FLYBASE:FBgn0015024" /db_xref="GeneID:32221" CDS 611..1624 /gene="CkIalpha" /locus_tag="Dmel_CG2028" /gene_synonym="anon-WO03040301.93; anon-WO03040301.95; CG2028; CK I; CK1; ck1a; Ck1a; CK1a; ck1alpha; Ck1alpha; CK1alpha; ckI; CKI; CkI alpha; CKI alpha; CkIa; CKIa; ckIalpha; CKIalpha; dmCK1; dmckI; Dmel\CG2028; l(1)G0492; PKA-C" /EC_number="2.7.11.1" /note="CG2028 gene product from transcript CG2028-RE; CG2028-PE; CkIalpha-PE; casein kinase I; casein kinase ialpha; casein kinase 1alpha; casein kinase-1; caesin kinase I alpha" /codon_start=1 /product="casein kinase ialpha, isoform E" /protein_id="NP_001285163.1" /db_xref="FLYBASE:FBpp0309354" /db_xref="GeneID:32221" /db_xref="FLYBASE:FBgn0015024" /translation="MDKMRILKESRPEIIVGGKYRVIRKIGSGSFGDIYLGMSIQSGE EVAIKMESAHARHPQLLYEAKLYRILSGGVGFPRIRHHGKEKNFNTLVMDLLGPSLED LFNFCTRHFTIKTVLMLVDQMIGRLEYIHLKCFIHRDIKPDNFLMGIGRHCNKLFLID FGLAKKFRDPHTRHHIVYREDKNLTGTARYASINAHLGIEQSRRDDMESLGYVMMYFN RGVLPWQGMKANTKQQKYEKISEKKMSTPIEVLCKGSPAEFSMYLNYCRSLRFEEQPD YMYLRQLFRILFRTLNHQYDYIYDWTMLKQKTHQGQPNPAILLEQLDKDKEKQNGKPL IAD" misc_feature 665..1462 /gene="CkIalpha" /locus_tag="Dmel_CG2028" /gene_synonym="anon-WO03040301.93; anon-WO03040301.95; CG2028; CK I; CK1; ck1a; Ck1a; CK1a; ck1alpha; Ck1alpha; CK1alpha; ckI; CKI; CkI alpha; CKI alpha; CkIa; CKIa; ckIalpha; CKIalpha; dmCK1; dmckI; Dmel\CG2028; l(1)G0492; PKA-C" /note="The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases; Region: Protein Kinases, catalytic domain; cl21453" /db_xref="CDD:473864" misc_feature order(686..697,704..706,710..712,749..751,755..757, 839..841,887..898,1025..1027,1037..1042,1046..1048, 1085..1090) /gene="CkIalpha" /locus_tag="Dmel_CG2028" /gene_synonym="anon-WO03040301.93; anon-WO03040301.95; CG2028; CK I; CK1; ck1a; Ck1a; CK1a; ck1alpha; Ck1alpha; CK1alpha; ckI; CKI; CkI alpha; CKI alpha; CkIa; CKIa; ckIalpha; CKIalpha; dmCK1; dmckI; Dmel\CG2028; l(1)G0492; PKA-C" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270870" ORIGIN 1 cagcacacga gtgaaaagtg ttttctgttc cccatttgaa ttatccgcgc agtgttgtgt 61 cagtgctgaa aatcgccgca gagtcgcgaa gtcaatttca atccgatagt ttagcagtgt 121 gccacggtga agtatcgttt ctcgttcata cctatctgag cgtatcgttc cacgatatca 181 ggtggcagtg tttggttgaa cctatcgggc cctatcgata taagcaaaag catttttgct 241 ggatctacca ttttatttta gttaataaaa tacatatatt tcctctcttt ttgttccgtt 301 tgtgcgcgta caaaactagc tgcgaactcg tgcaatattt cataaactga atgggaaaac 361 aacgataacg acgaaagaaa acgaaaacgg atctgcgacg aaattttccc cgttccgttt 421 ttttttctcc accagcagca gaagcagcag agcaaaagca gcgaatatat ttgtaaaaga 481 gagccccaac cttgagaaaa aacaaccagc agggcaataa ttagttgaat ttatcgtctg 541 ctgtttttca agtgaacgcg tccaactgtt tttgaagcga agcgcttagg cggaggagca 601 gctagccagg atggacaaga tgcggatatt gaaggaaagt cgccccgaga taatcgtcgg 661 tggcaaatat cgggtgatca ggaagattgg aagcggatcg tttggcgaca tttacctggg 721 catgagcatc cagagcggcg aagaagtggc catcaagatg gagagcgccc acgcccgcca 781 tccgcagctg ttgtacgagg ccaagctgta ccgcattctg agcggcggcg ttggattccc 841 tcgtatacgt caccatggca aggaaaagaa cttcaacacc ctggtcatgg acctgctggg 901 accctcgctg gaggatctgt tcaatttctg tacgcgccat ttcacaatca aaacggttct 961 gatgctcgtc gaccagatga tcggacgctt ggagtacatc catctcaagt gcttcatcca 1021 tcgcgacatc aagccggata acttcctaat gggcattggt cggcactgca ataagctgtt 1081 cctgatcgat ttcggtctgg ccaagaagtt ccgcgatccg cacacgcgcc atcacatcgt 1141 ttaccgcgag gacaagaacc tcaccggcac tgcccgctat gcctcgatca atgcccatct 1201 gggcatcgag cagtcgcggc gtgacgacat ggaatcgctt ggatacgtga tgatgtactt 1261 caatcgcggc gtactgccat ggcaaggcat gaaggccaac accaagcagc agaaatacga 1321 gaagatctcc gaaaagaaga tgtccacgcc catcgaggtc ctctgcaagg gctcgccggc 1381 cgagttctcc atgtatctga actattgtcg tagcctgcgc ttcgaggagc agccagatta 1441 catgtaccta cgtcaattgt tccgcatact gttcagaacg ctgaaccatc agtatgacta 1501 catctacgac tggacaatgc tgaagcagaa gacccatcag ggtcaaccca atccagctat 1561 actcttggag caattggaca aggacaagga gaagcagaac ggcaagcccc tgatcgcgga 1621 ctaagagctg cagcgcattc agacgaatgg ggggagtgca tcagagaagg agaacgtgga 1681 tgcgtggatg taaatgacgt tgatgtgggc gaaaggcccg gcaaggagcg gagcaaatat 1741 gaaacagacg caaccgtaaa attgagtaac accagcggtc gtccgaatgt ttcttaatat 1801 taatttaaat tcaatactaa acaaataagg aaccacaaac aagcaagcaa cggcatcatc 1861 agcagggcat ataaaatgat accccagcaa atgtgattca cgagtgaatc actgcgatcg 1921 ataataacat aaaccgaaat tattgcaaat caatacgatt taaactaatt tgcaatccat 1981 acacaaatca acatacttgc ataacacacc cacacacaca catacataca cacactcacc 2041 cactctcatc cacccactca aaaagcaaac atcattgccc aaaaggggga gaaaaaagaa 2101 aagaagagag aagaagaaaa gaagaggaaa gaaatcaaca acacttagcc taataaatta 2161 caagaaataa tattggtaga gttggaggaa caaaatgaag taatgctgag gaaactaaac 2221 ctatatatat atgtatatgt atatatgtaa gcgaataaac acaacaccat atatgtatgc 2281 atatacccat ttgattcacg tcaaatcgaa tccaatgctt aattatgaat cgagcgaaac 2341 aaaactcaat aactaattaa aatggaataa ataagaaaca aaacagcaac aagcaaacaa 2401 caacac