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LOCUS NM_001298208 2447 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001298208 VERSION NM_001298208.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2447) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2447) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2447) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2447) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2447) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2447) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2447) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2447) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2447) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2447) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2447) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2447) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2447) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2447) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2447) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2447) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2447) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2447) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2447) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2447) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2447) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2447) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2447) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2447 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2447 /gene="Karl" /locus_tag="Dmel_CG4139" /gene_synonym="CG4139; Dmel\CG4139; karl" /map="10E3-10E3" /db_xref="FLYBASE:FBgn0030334" /db_xref="GeneID:32131" CDS 1125..1925 /gene="Karl" /locus_tag="Dmel_CG4139" /gene_synonym="CG4139; Dmel\CG4139; karl" /note="CG4139 gene product from transcript CG4139-RC; CG4139-PC; Karl-PC" /codon_start=1 /product="karl, isoform C" /protein_id="NP_001285137.1" /db_xref="FLYBASE:FBpp0312033" /db_xref="GeneID:32131" /db_xref="FLYBASE:FBgn0030334" /translation="MERIMGRNGSLLLTAVLIIILDVLLAPVGANLWTRHNSNAYQTR RRSGPSNRCPKVGAIKNFDLERMMGCWHVVQYYASTEELPEYACMRSHFSFSKEDQHI TMNFSYIFAEDPLREKLVGNITWMIPKFQEPGHWQHTEDIYEGIYNTYVLDTDYDTWG LVMHCAEKKKQPRYLSALLLSRKTSLADNEISFLRGKLPQDIDTSFMFNIGQESCDNL MESSRDDPLAYVVNGRKRAKEIFKIINKPDGRVRASSEARSYEQSEKL" misc_feature 1320..1670 /gene="Karl" /locus_tag="Dmel_CG4139" /gene_synonym="CG4139; Dmel\CG4139; karl" /note="lipocalin/cytosolic fatty acid-binding protein family; Region: lipocalin_FABP; cd00301" /db_xref="CDD:381182" misc_feature order(1323..1325,1335..1337,1395..1397,1401..1403, 1434..1436,1440..1442,1446..1448,1491..1493,1497..1499, 1503..1505,1530..1532,1536..1538,1563..1565,1569..1571, 1575..1577,1602..1604,1608..1610,1614..1616,1650..1652, 1656..1658,1662..1664) /gene="Karl" /locus_tag="Dmel_CG4139" /gene_synonym="CG4139; Dmel\CG4139; karl" /note="ligand binding cavity [chemical binding]; other site" /db_xref="CDD:381182" ORIGIN 1 acttgttgct ttagttcgtt tcatttcgtc tcgctgccgc attaagagcc gcttttcgct 61 tcggtgcgtc tgcgaagggg cggaaggtgg tgctgagaag aggggggtgg cgaatggtgg 121 gagaaaggcg atggaagggg caaggaagga gctgccgtag aagccggaac tggccgctaa 181 cgcatcgcaa cgcaatgcgg cgacgaaagt tgcgccgctt ttttgggctg gccaacaaaa 241 aaccagacgg ctccaaaaga aatgggagaa aaaagcaaaa aaaaaaagac gaagctaaaa 301 agaagctaaa ctgcagacgc aggcggaaga agaagcggcg gcggcggcgg caaaagtagc 361 aaccttcgag gatgtccagt ttcattccag tccggtcgtg aaaatgccgc gcaactcgtt 421 tcgcaataaa gagaaagtgt ccagcggatc gcgctgttcg ttctggcgat cgtaaagaat 481 aaatttgcag gctattaaaa tgtttcctgt ttccactcac caccgctcaa cgctccccgc 541 tctcacccgc tcttttccgc atccacttcg ccaccccgaa aatttcgctc tccgcggcga 601 gaaagttgcc tggaaatctg gaaatctgca tccatgcgac aagtgaaaac aagatgcagc 661 caaaaatacc tactcccgtt ccccagactc tatatatttc catacaagcc tgcaaatatg 721 tgtatgtata tgcttacata cataggtatg tgcgcattgg aaggcgttga ctggacttta 781 ctggcaaacg gacgttataa ttgataagag cgactaactc acccgcgctc ttgagagcaa 841 ggggaaatgg aacggcggct gattaagttc caatattaaa ctgctgaaaa gagatggcat 901 cgccttggaa aaccgctaat ctttcggtgc tagcgattac aggaagtaat ggaaagattt 961 tttagagtgt acttattgct gactgctaat gtcgcatgtt gctcgcggag atggcgcagt 1021 gccatcgaaa acagttccag ctacagcgca acggagatcg agcgtctgaa cccgccggaa 1081 gatcaacgac aataaataat tgtagctcac cgtcatccgg attaatggag aggatcatgg 1141 gcaggaatgg atcgctccta ctgaccgccg tcctcataat tatcctggat gttttgcttg 1201 caccagtggg tgccaacctg tggacacgac acaatagcaa tgcctatcaa accaggaggc 1261 gctcaggtcc cagcaatcgg tgtcccaagg tgggagccat taagaacttc gatttggagc 1321 gcatgatggg ctgttggcac gtggttcagt attacgcatc cacagaggaa cttccggagt 1381 acgcgtgcat gcgcagtcac ttttcctttt ccaaagagga tcagcatata acgatgaact 1441 ttagctacat atttgcggag gatccgctgc gcgagaagct cgtgggcaac atcacctgga 1501 tgatacccaa attccaagag ccaggacatt ggcagcacac ggaggacata tatgagggca 1561 tctacaacac atacgttctg gacacggact acgacacctg gggcctggtg atgcactgcg 1621 ccgagaagaa gaagcaacca cgttacctgt ccgccctgct tttgtcgcgg aaaacatcgt 1681 tggccgacaa cgagatcagc tttctgcgcg gcaagttgcc gcaggatatc gacacatcct 1741 ttatgtttaa catcgggcag gaatcgtgcg acaatctaat ggaatctagt cgcgacgatc 1801 cactggccta tgttgtgaat ggacgcaaga gagccaagga aatcttcaaa attatcaata 1861 agcctgacgg cagagtgcgc gctagtagcg aagcgagaag ctatgagcaa agcgagaagc 1921 tgtgagcaaa gcgagtcgat ggcagagtaa gagctaagcg agaaacgagc tacattgctc 1981 tcttttagtt attaatgtga acgtgatgga ttcggacgag gaattttttg catcaagcgc 2041 aactattaac tttctgttaa aactgtcgtc caccctctta actgaaatag aaatgaaaaa 2101 ggcgaattca ataatttata taaaaggtta tttacagaat ggaacaagac aaaacaaaat 2161 aacgtgtgtt ttgaaaataa acggtaatat agcgcagaat ataacaaaac aatcgtacgc 2221 cctgagcgag ttgaagcgat aaggccttgc tctcgctttt tcgcttaagc tcgcaactcg 2281 cttcgctctc actctgacat ctttcgagcg attgcgctta aaatgcatgc agtgggttta 2341 tcgctcgttc ttgtattatt agtctaatca atcaactaag agaaaatatt atacgaaaac 2401 ccgatttatt ttgtcaataa tacaaattta aataagcact ttcaaac