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LOCUS NM_001298205 2522 bp mRNA linear INV 26-DEC-2023 variant H (PhKgamma), mRNA. ACCESSION NM_001298205 VERSION NM_001298205.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2522) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2522) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2522) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2522) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2522) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2522) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2522) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2522) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2522) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2522) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2522) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2522) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2522) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2522) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2522) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2522) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2522) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2522) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2522) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2522) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2522) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2522) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2522) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2522 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2522 /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="Phosphorylase kinase gamma" /map="10D5-10D5" /db_xref="FLYBASE:FBgn0011754" /db_xref="GeneID:32120" CDS 512..1771 /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /EC_number="2.7.11.1" /EC_number="2.7.11.19" /note="CG1830 gene product from transcript CG1830-RH; CG1830-PH; PhKgamma-PH; phosphorylase kinase gamma" /codon_start=1 /product="phosphorylase kinase gamma, isoform H" /protein_id="NP_001285134.1" /db_xref="FLYBASE:FBpp0310241" /db_xref="GeneID:32120" /db_xref="FLYBASE:FBgn0011754" /translation="MAKDEEDDLLPDKDAAKGFYAKYEPKEILGRGISSTVRRCIEKE TGKEFAAKIIDLGATTESGETNPYHMLEATRQEISILRQVMGHPYIIDLQDVFESDAF VFLVFELCPKGELFDYLTSVVTLSEKKTRTIMRQIFEGVEYIHAKSIVHRDLKPENIL LDENHNVKITDFGFAKQLQEGEKLTNLCGTPGYLAPETLKCNMFEGSPGYSQEVDIWA CGVIMFTLLVGCPPFWHRKQMVMLRNIMEGKYSFTSPEWADISEDPKDLIRKCLVVDP SQRITVKEVLRHPFFNQMLFEQNIDGLKRSLSTKSRRMSRITEIALLRKQSRFNARKK FQFAILVIRAIIRIRRLRFTAEPLHVEEAIRDPYRVKVLRKVIDGCAFRVYGHWVKKG EGQNRAALFENTPRTELHALYINNLSR" misc_feature 566..1384 /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="Catalytic domain of the Serine/Threonine Kinase, Phosphorylase kinase Gamma subunit; Region: STKc_PhKG; cd14093" /db_xref="CDD:270995" misc_feature order(596..601,605..610,614..616,620..622,659..661, 665..667,782..784,830..835,839..841,851..853,857..859, 965..970,974..976,980..985,989..991,1022..1024,1031..1033, 1067..1087,1091..1093) /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="active site" /db_xref="CDD:270995" misc_feature order(596..601,605..610,614..616,620..622,659..661, 665..667,782..784,830..835,839..841,851..853,968..970, 974..976,980..985,989..991,1022..1024) /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270995" misc_feature order(608..610,851..853,857..859,965..970,974..976, 980..982,1031..1033,1067..1087,1091..1093) /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270995" misc_feature 1019..1087 /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="activation loop (A-loop); other site" /db_xref="CDD:270995" ORIGIN 1 gtgccacctc cagttttgtg attgtgtcaa aaatacaggg ttttattgtt gcactagcaa 61 tttaatccga ggaatataaa ttttgtgtgg agttatgttc gagacgtcgt tgccagcgat 121 tcaagaggcg agcggtcaca cgtttggcat tcgttattaa ttaaatcagc cgccaacagc 181 tgagcgagag agcaatcgag agcgacagga gaggatccac ttccaatcga atcgggtgga 241 atcgaatagc aggggcttgg taattaaaag gaagaccgaa ctgaactgaa ctaaactgaa 301 acggaacgaa gcgaagcgaa gcgcggcgag gcggcaagaa acgaaaagaa aagaacgaaa 361 gtcggcagag tcggaaagtc ggcaagtctg attgtcggca aagtcgcaaa gtcggagagt 421 cacagtctca atcgcagtcg gcgagagatt ccactcgtgt cgcacattcc aaactgccgt 481 ttcggcagcc ggcaagattt cacgaaatct aatggccaag gacgaggagg atgatctgct 541 gcccgacaag gatgcggcca agggcttcta tgccaaatac gagcccaagg agattctggg 601 caggggcatc agttcgaccg tgaggcgatg tatcgaaaag gagacgggca aggagtttgc 661 cgccaagatc atcgacttgg gcgccaccac agagtcaggc gagacgaatc catatcacat 721 gctggaagca accagacaag aaatctcaat actgcgccag gtcatggggc atccctacat 781 aattgatctg caggatgtgt tcgagtcaga tgcatttgtt ttcctcgtct tcgagctgtg 841 tcccaaaggt gaactcttcg actatctgac ctctgtggtg acgctatccg agaagaagac 901 gcgcaccatt atgcgacaaa tctttgaggg cgtcgagtac atacacgcga agagcattgt 961 ccatcgggat cttaagcccg agaatatctt gctggacgag aaccacaacg ttaagatcac 1021 ggattttggc ttcgccaagc agttgcaaga gggcgagaaa cttacaaatc tgtgcggaac 1081 gccgggttat ttggctcccg aaacgctcaa gtgcaacatg ttcgagggat cccccggcta 1141 ctcgcaggaa gtcgacatat gggcctgtgg cgtgattatg tttacgctgc tcgtcggttg 1201 tccacctttc tggcaccgca agcagatggt catgctgcgg aatatcatgg agggcaagta 1261 cagcttcacc tcgccggagt gggctgatat ttcagaggat cccaaggatc tgatacgcaa 1321 atgtctagtc gttgatcctt cgcaacgtat aaccgtcaag gaagtattaa gacatccatt 1381 cttcaaccaa atgctgttcg agcaaaacat tgatggcctc aagcgcagcc tgtcgaccaa 1441 gtcccgacga atgagtcgca tcactgagat cgcactgctg cgcaaacaaa gtcgcttcaa 1501 cgcgcgcaaa aagttccaat tcgccatact cgtgatacgg gccatcattc ggatacggcg 1561 cctacgcttc accgccgagc cgctgcacgt tgaggaggcc atccgggatc cgtatcgcgt 1621 caaggttctg cgcaaggtca tcgatggctg tgccttccgt gtctacgggc attgggtcaa 1681 gaagggtgag ggccagaatc gggccgccct cttcgagaat actccccgca cggagctcca 1741 cgcgctctac atcaacaatc tcagccgata gaaggcggtc gggcatgggg catgggccat 1801 gggccatggg gaatggggcg tggcggagtc gcgctgatct acacaagcac acacacacac 1861 acacacacag aaagaaagaa aaaagaaaat aagaggaaac acagtaagca agaaaccaag 1921 aaacaaacca acaaacgaat tagcaaaagc tactactatg agaagcagga aattgcgatt 1981 gcaacaggac acaccaaaca caccaaaaag gattcaatcc atccatacat tcggattcgc 2041 ctcgttctgg acggacagcc aacacgcagg tgtacatata tacgtatgta tgtatgtatg 2101 catgcctagt aacattacct cccctgcctt cttcgtcctt gtgattttgt ttaatacttt 2161 ttaattcgat tttattgcgt ctaatgcgcg ccagccatct agtgtaatca gttagtgtag 2221 tgaatgtagc gttcaaccac ggccatgcat accacccaga tggtacatgg ctatccagtg 2281 gtccaacgtt atgacccggc gccagaacga gccgaatcgg atgacgagat gcgattgatt 2341 gttgggttgg gggaatgtac acacctcatc tcaccatact ccacacccaa ctaagcccac 2401 acaagcaagc gtacatgcat atgtattttc tgttaatgat tctattaaat tatttaattg 2461 tattgctaag cgtttacatt ttaattgtta tgttgtagta tacacaataa ataaaaacaa 2521 ac