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LOCUS NM_001298204 2232 bp mRNA linear INV 26-DEC-2023 variant F (PhKgamma), mRNA. ACCESSION NM_001298204 VERSION NM_001298204.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2232) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2232) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2232) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2232) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2232) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2232) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2232) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2232) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2232) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2232) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2232) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2232) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2232) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2232) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2232) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2232) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2232) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2232) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2232) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2232) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2232) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2232) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2232) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2232 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2232 /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="Phosphorylase kinase gamma" /map="10D5-10D5" /db_xref="FLYBASE:FBgn0011754" /db_xref="GeneID:32120" CDS 306..1481 /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /EC_number="2.7.11.1" /EC_number="2.7.11.19" /note="CG1830 gene product from transcript CG1830-RF; CG1830-PF; PhKgamma-PF; phosphorylase kinase gamma" /codon_start=1 /product="phosphorylase kinase gamma, isoform F" /protein_id="NP_001285133.1" /db_xref="FLYBASE:FBpp0310184" /db_xref="GeneID:32120" /db_xref="FLYBASE:FBgn0011754" /translation="MAKDEEDDLLPDKDAAKGFYAKYEPKEILGRGISSTVRRCIEKE TGKEFAAKIIDLGATTESGETNPYHMLEATRQEISILRQVMGHPYIIDLQDVFESDAF VFLVFELCPKGELFDYLTSVVTLSEKKTRTIMRQIFEGVEYIHAKSIVHRDLKPENIL LDENHNVKITDFGFAKQLQEGEKLTNLCGTPGYLAPETLKCNMFEGSPGYSQEVDIWA CGVIMFTLLVGCPPFWHRKQMVMLRNIMEGKYSFTSPEWADISEDPKDLIRKCLVVDP SQRITVKEVLRHPFFNQMLRKQSRFNARKKFQFAILVIRAIIRIRRLRFTAEPLHVEE AIRDPYRVKVLRKVIDGCAFRVYGHWVKKGEGQNRAALFENTPRTELHALYINNLSR" misc_feature 360..1178 /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="Catalytic domain of the Serine/Threonine Kinase, Phosphorylase kinase Gamma subunit; Region: STKc_PhKG; cd14093" /db_xref="CDD:270995" misc_feature order(390..395,399..404,408..410,414..416,453..455, 459..461,576..578,624..629,633..635,645..647,651..653, 759..764,768..770,774..779,783..785,816..818,825..827, 861..881,885..887) /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="active site" /db_xref="CDD:270995" misc_feature order(390..395,399..404,408..410,414..416,453..455, 459..461,576..578,624..629,633..635,645..647,762..764, 768..770,774..779,783..785,816..818) /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270995" misc_feature order(402..404,645..647,651..653,759..764,768..770, 774..776,825..827,861..881,885..887) /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270995" misc_feature 813..881 /gene="PhKgamma" /locus_tag="Dmel_CG1830" /gene_synonym="anon-sts6; CG1830; Dmel\CG1830; DPhK-gamma; EP779; ESTS:194B3T; PhKg; Phkgamma; phkgamma CES" /note="activation loop (A-loop); other site" /db_xref="CDD:270995" ORIGIN 1 gtgccacctc cagttttgtg attgtgtcaa aaatacaggg ttttattgtt gcactagcaa 61 tttaatccga ggaatataaa ttttgtgtgg agttatgttc gagacgtcgt tgccagcgat 121 tcaagaggcg agcggtcaca cgtttggcat tcgttattaa ttaaatcagc cgccaacagc 181 tgagcgagag agcaatcgag agcgacagga gaggatccac ttccaatcga atcgggtgga 241 atcgaatagc aggggcttga ttccaaactg ccgtttcggc agccggcaag atttcacgaa 301 atctaatggc caaggacgag gaggatgatc tgctgcccga caaggatgcg gccaagggct 361 tctatgccaa atacgagccc aaggagattc tgggcagggg catcagttcg accgtgaggc 421 gatgtatcga aaaggagacg ggcaaggagt ttgccgccaa gatcatcgac ttgggcgcca 481 ccacagagtc aggcgagacg aatccatatc acatgctgga agcaaccaga caagaaatct 541 caatactgcg ccaggtcatg gggcatccct acataattga tctgcaggat gtgttcgagt 601 cagatgcatt tgttttcctc gtcttcgagc tgtgtcccaa aggtgaactc ttcgactatc 661 tgacctctgt ggtgacgcta tccgagaaga agacgcgcac cattatgcga caaatctttg 721 agggcgtcga gtacatacac gcgaagagca ttgtccatcg ggatcttaag cccgagaata 781 tcttgctgga cgagaaccac aacgttaaga tcacggattt tggcttcgcc aagcagttgc 841 aagagggcga gaaacttaca aatctgtgcg gaacgccggg ttatttggct cccgaaacgc 901 tcaagtgcaa catgttcgag ggatcccccg gctactcgca ggaagtcgac atatgggcct 961 gtggcgtgat tatgtttacg ctgctcgtcg gttgtccacc tttctggcac cgcaagcaga 1021 tggtcatgct gcggaatatc atggagggca agtacagctt cacctcgccg gagtgggctg 1081 atatttcaga ggatcccaag gatctgatac gcaaatgtct agtcgttgat ccttcgcaac 1141 gtataaccgt caaggaagta ttaagacatc cattcttcaa ccaaatgctg cgcaaacaaa 1201 gtcgcttcaa cgcgcgcaaa aagttccaat tcgccatact cgtgatacgg gccatcattc 1261 ggatacggcg cctacgcttc accgccgagc cgctgcacgt tgaggaggcc atccgggatc 1321 cgtatcgcgt caaggttctg cgcaaggtca tcgatggctg tgccttccgt gtctacgggc 1381 attgggtcaa gaagggtgag ggccagaatc gggccgccct cttcgagaat actccccgca 1441 cggagctcca cgcgctctac atcaacaatc tcagccgata gaaggcggtc gggcatgggg 1501 catgggccat gggccatggg gaatggggcg tggcggagtc gcgctgatct acacaagcac 1561 acacacacac acacacacag aaagaaagaa aaaagaaaat aagaggaaac acagtaagca 1621 agaaaccaag aaacaaacca acaaacgaat tagcaaaagc tactactatg agaagcagga 1681 aattgcgatt gcaacaggac acaccaaaca caccaaaaag gattcaatcc atccatacat 1741 tcggattcgc ctcgttctgg acggacagcc aacacgcagg tgtacatata tacgtatgta 1801 tgtatgtatg catgcctagt aacattacct cccctgcctt cttcgtcctt gtgattttgt 1861 ttaatacttt ttaattcgat tttattgcgt ctaatgcgcg ccagccatct agtgtaatca 1921 gttagtgtag tgaatgtagc gttcaaccac ggccatgcat accacccaga tggtacatgg 1981 ctatccagtg gtccaacgtt atgacccggc gccagaacga gccgaatcgg atgacgagat 2041 gcgattgatt gttgggttgg gggaatgtac acacctcatc tcaccatact ccacacccaa 2101 ctaagcccac acaagcaagc gtacatgcat atgtattttc tgttaatgat tctattaaat 2161 tatttaattg tattgctaag cgtttacatt ttaattgtta tgttgtagta tacacaataa 2221 ataaaaacaa ac