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LOCUS NM_001298200 2279 bp mRNA linear INV 26-DEC-2023 transcript variant B, mRNA. ACCESSION NM_001298200 VERSION NM_001298200.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2279) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2279) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2279) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2279) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2279) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2279) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2279) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2279) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2279) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2279) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2279) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2279) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2279) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2279) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2279) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2279) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2279) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2279) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2279 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2279 /gene="nod" /locus_tag="Dmel_CG1763" /gene_synonym="CG1763; Dmel\CG1763; DmNod; DnMod; KIF 22; KIF22; l(1)TW6; Nod; NOD" /note="no distributive disjunction" /map="10C7-10C8" /db_xref="FLYBASE:FBgn0002948" /db_xref="GeneID:32107" CDS 153..2153 /gene="nod" /locus_tag="Dmel_CG1763" /gene_synonym="CG1763; Dmel\CG1763; DmNod; DnMod; KIF 22; KIF22; l(1)TW6; Nod; NOD" /note="CG1763 gene product from transcript CG1763-RB; CG1763-PB; nod-PB; kineskin-10; Kinesin4C; No distributive disjunction; kinesin-10" /codon_start=1 /product="no distributive disjunction, isoform B" /protein_id="NP_001285129.1" /db_xref="FLYBASE:FBpp0309258" /db_xref="GeneID:32107" /db_xref="FLYBASE:FBgn0002948" /translation="MEGAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVD QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPP GEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMP MVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTH HSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSV LTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLRLNPMQVARQKQSL AARTTHVFRQALCTSTAIKSNAANHNSIVVPKSKYSTTKPLSAVLHRTRSELGMTPKA KKRARELLELEETTLELSSIHIQDSSLSLLGFHSDSDKDRHLMPPPTGQEPRQASSQN STLMGIVEETEPKESSKVQQSMVAPTVPTTVRCQLFNTTISPISLRASSSQRELSGIQ PMEETVVASPQQPCLRRSVRLASSMRSQNYGAIPKVMNLRRSTRLAGIREHATSVVVK NETDAIPHLRSTVQKKRTRNVKPAPKAWMANNTKCFLDLLNNGNVKQLQEIPGIGPKS AFSLALHRSRLGCFENLFQVKSLPIWSGNKWERFCQINCLDT" misc_feature 174..1106 /gene="nod" /locus_tag="Dmel_CG1763" /gene_synonym="CG1763; Dmel\CG1763; DmNod; DnMod; KIF 22; KIF22; l(1)TW6; Nod; NOD" /note="Kinesin motor domain; Region: KISc; cd00106" /db_xref="CDD:276812" misc_feature order(192..194,198..203,411..437,828..830) /gene="nod" /locus_tag="Dmel_CG1763" /gene_synonym="CG1763; Dmel\CG1763; DmNod; DnMod; KIF 22; KIF22; l(1)TW6; Nod; NOD" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:276812" misc_feature order(969..971,978..980,987..989) /gene="nod" /locus_tag="Dmel_CG1763" /gene_synonym="CG1763; Dmel\CG1763; DmNod; DnMod; KIF 22; KIF22; l(1)TW6; Nod; NOD" /note="microtubule interaction site [polypeptide binding]; other site" /db_xref="CDD:276812" misc_feature 1968..>2087 /gene="nod" /locus_tag="Dmel_CG1763" /gene_synonym="CG1763; Dmel\CG1763; DmNod; DnMod; KIF 22; KIF22; l(1)TW6; Nod; NOD" /note="DNA uptake protein ComE or related DNA-binding protein [Replication, recombination and repair]; Region: ComEA; COG1555" /db_xref="CDD:441164" ORIGIN 1 cagatcgttc ttagtgttat taccgcgacg gtcacactgc caaaatcaat ttgaaatgca 61 aaggtcgctt ggcttcgtca aaaaagtaaa ataattacgg tgaatgcaag ccaattgtgc 121 attattcaaa caacttcaat tcttcaatct gcatggaggg cgccaaatta agcgcagttc 181 ggattgcggt ccgcgaggcg ccgtaccgcc agttcttggg gcgtcgggag cccagcgtcg 241 tccagtttcc gccatggagc gacggaaagt cgttaatagt ggatcagaat gaattccact 301 tcgatcacgc ctttcccgcg accatcagcc aggatgagat gtaccaggcg ctgatcttgc 361 cgctggtgga caagctgctc gagggattcc agtgcactgc actcgcctac ggccagacgg 421 gaacgggcaa gagctactca atgggcatga cacctccggg agagatactg cccgagcacc 481 tgggtattct gcctcgcgcc ctgggcgaca tttttgagcg cgtgaccgcc cggcaggaga 541 acaacaagga tgcgattcag gtgtacgcct ccttcataga gatctacaat gagaaaccct 601 tcgatctgct gggctccacg ccacatatgc ccatggtggc ggcgcgttgc cagcgatgca 661 cctgccttcc tttgcacagc caggcggatc tgcatcacat cttggagcta ggcactcgca 721 atcgacgcgt tcgtcccacc aatatgaatt ccaatagttc gcgatcccat gccatagtca 781 ccattcacgt gaagagtaaa acccatcact cgcggatgaa tattgtggat ctggccggtt 841 cagaaggcgt gcggcgaact gggcacgagg gcgtggccag gcaggagggc gtcaacatca 901 atctgggcct gttgagcatc aacaaggtgg tgatgtccat ggcggcgggc cacacagtga 961 taccataccg cgacagcgtc cttaccacag ttctgcaggc ctcgctaacc gcgcagtcgt 1021 atctgacctt tctggcctgc atcagtccgc atcaatgcga tctcagcgag acgttgtcca 1081 ccctgcgttt tggcaccagt gccaagaagc ttcggctgaa tccgatgcaa gtggcgcgcc 1141 agaagcaatc gctggccgca cggacaacac acgtcttccg ccaagcgcta tgcacctcga 1201 cggccatcaa gtcaaacgca gccaatcata atagcatagt ggttccaaaa tccaaatata 1261 gcacaaccaa gccgctgagc gccgtgctcc atcgaactcg ctccgaactt ggcatgacgc 1321 ccaaagctaa gaaaagggct cgcgagctat tggagctgga ggagaccacg ctggagctct 1381 cgtctataca cattcaggac agcagtctga gtctgttggg tttccatagc gatagcgata 1441 aggataggca tttaatgcct cccccaacag ggcaagagcc aaggcaagcc agcagccaga 1501 actctacgct aatgggcatt gtcgaagaga ccgagcccaa ggaatcgtca aaggtgcaac 1561 agtcaatggt tgcccccacg gtgcccacaa ctgtacgctg ccagctgttc aacaccacca 1621 tcagtcccat cagtctacgg gcatccagct ctcagcgaga acttagcggc atccagccaa 1681 tggaggagac agtagtggct tcgccacagc agccatgcct tcgtcgttcc gtgcgtctag 1741 cgagtagcat gcgttcgcag aactatggag ccattcccaa ggttatgaat ttgcggcgca 1801 gcacgcggct ggcgggaatc cgggaacatg ccacctccgt tgttgtgaaa aacgagacgg 1861 atgcgatacc gcaccttcga agtacagtgc aaaaaaaacg tacgcgaaac gtgaaacctg 1921 cgcccaaggc ctggatggcc aataatacaa aatgttttct ggacctgctt aacaatggaa 1981 acgttaagca attgcaggag attccaggga tcggtccaaa gtccgccttt agtttggcct 2041 tgcacagatc ccgcctgggt tgcttcgaga atctttttca agtcaaatcc ctgcccattt 2101 ggtcgggaaa taaatgggaa cgattttgtc aaattaactg tctcgacact tgatacaatt 2161 actaattaaa tagcatttta attcgaatat agtatagtga ttgttattta tgtggcatat 2221 actttgattt tacaactata gtaggagtaa aaaaaggagc cggatatcct aaaacaaac