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LOCUS NM_001298163 2414 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_001298163 VERSION NM_001298163.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2414) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2414) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2414) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2414) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2414) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2414) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2414) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2414) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2414) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2414) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2414) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2414) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2414) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2414) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2414) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2414) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2414) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2414) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2414) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2414) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2414) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2414) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2414) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2414 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2414 /gene="sofe" /locus_tag="Dmel_CG1655" /gene_synonym="CG1655; Dmel\CG1655" /note="sister of feo" /map="9F5-9F5" /db_xref="FLYBASE:FBgn0030242" /db_xref="GeneID:32016" CDS 143..1966 /gene="sofe" /locus_tag="Dmel_CG1655" /gene_synonym="CG1655; Dmel\CG1655" /note="CG1655 gene product from transcript CG1655-RB; CG1655-PB; sofe-PB" /codon_start=1 /product="sister of feo, isoform B" /protein_id="NP_001285092.1" /db_xref="FLYBASE:FBpp0312030" /db_xref="GeneID:32016" /db_xref="FLYBASE:FBgn0030242" /translation="MLSSEHKARILALTAEHFDELHAMWSRMFEPQACEDCLARLKDH VHTFYTDLRKETSDKEQGILNDIAVLRNEASGLRRLLHKAVDIGERPDDVPMEIWYIK LEKYIEQLRKELVSRRAEIRELLHQQQQLCDELGEQPLSLLADPLPLPEEMDPFREHL AQLRDQRVQRLRDMDELRQNIKRNIKLLELQLRTDSEKRLLNADNHKLTPYAYVRLQE MDKEFADQVQDLIDRIDEMRGKIECLWQRLRMTDEYAMRRVREATSYNQCTYDILREE LERCQAMRQQNLIAFIEQLRIEINEWWDLSLKSTEERRRFTTYYCDTQTEDVLEQFEK ELDNLKEFYNSNRKIFELYANRGELWTRMEALEAKANDPNRFNNRGGQLLKEEKERKT IMSRLPKIDQQITELVQVYMSETHTPFLVHGVDILERMSADWERHRQSKKQPSAQKKD GSNTSGQMKPPMVPLTPNTQKSNRGIHGSTSSLKKTPTKANASTTAMSTGNLHKRRHP QHHNTNSPQPAAAAKRNLIASLECNNASRKVCVNGQKLLKSPQRKVRVLEYSVRRGKG SGRPSTGSRNPQKIRPIPKIHVRPPSGEENESPDEEAVVAI" misc_feature 188..1561 /gene="sofe" /locus_tag="Dmel_CG1655" /gene_synonym="CG1655; Dmel\CG1655" /note="Microtubule associated protein (MAP65/ASE1 family); Region: MAP65_ASE1; pfam03999" /db_xref="CDD:427641" ORIGIN 1 cgagtttgat gtacagtttg aaatttaccg atttaaacat agcaacattg cgtccatacg 61 ttctgattcg aattgaattt catgtttact tacatccaac cacacacgag aacacgacac 121 agaaacaaac aaaataaaca caatgctatc tagcgaacac aaagcaagga tactagcgct 181 gacggccgag cacttcgacg agctgcacgc aatgtggtcg cgaatgtttg agccgcaagc 241 ctgcgaggat tgtctcgccc gtcttaagga tcacgtacac acattctaca cggatctccg 301 caaggagacg agcgacaagg agcagggtat actcaacgac atagccgttt tgcgcaacga 361 ggccagcggg ctaaggcggc tgcttcacaa agcggtggac attggcgagc ggccggacga 421 tgtgccgatg gagatctggt acattaagct ggagaaatac atcgaacaac tgcgcaaaga 481 gctggtcagc cgacgggcag agatcaggga gctactccat caacagcagc agctctgcga 541 tgagctgggc gaacagccgc tttcacttct agctgatccc ctgccgctgc ccgaggagat 601 ggaccccttt cgggagcacc tagcccagct gcgcgatcag cgagtgcagc gcctcaggga 661 tatggacgag ctgcgccaga acatcaaacg aaacataaaa ctactcgaac ttcaattgcg 721 aacggactcg gaaaagcggt tactcaatgc ggataaccat aagcttactc cctacgccta 781 cgtgcgcctg caagaaatgg acaaagagtt cgccgaccag gtgcaggatc taatcgaccg 841 catcgacgag atgcgcggca agattgaatg cctctggcag cggctcagga tgaccgacga 901 atacgccatg cgtcgtgtgc gcgaagccac gtcctataac cagtgcacct acgacatatt 961 gcgcgaggag ctggagcgct gccaggcgat gcggcagcag aatctgattg ccttcatcga 1021 gcagctgcgc attgagatca acgagtggtg ggatctttca ctgaaaagca ccgaggagcg 1081 caggcgcttc accacctact actgtgatac gcagaccgaa gatgttctcg agcagttcga 1141 gaaggagctg gacaacctta aggagttcta caacagcaac aggaagatat ttgagctata 1201 cgcgaatcga ggcgagctat ggacgcgcat ggaggccctg gaggccaagg ccaacgatcc 1261 aaatcggttc aacaatcgcg gtggacagct gctcaaggag gagaaggagc gcaagactat 1321 catgtcccgt ctgcccaaga tcgatcaaca aatcaccgaa ctggtgcagg tctacatgag 1381 tgaaacgcac acgccgttcc tggtgcacgg cgtggatata ctggagcgca tgtcggcgga 1441 ctgggagcgg catcgacagt ccaaaaagca gccctccgcc cagaagaagg atggcagcaa 1501 tacgagcggc caaatgaagc cgccaatggt gcctcttacg cccaatacgc agaagagcaa 1561 ccggggcatc catggatcca catcctcgtt gaagaagacg ccgaccaagg caaatgccag 1621 caccacggca atgagcacag ggaatctgca caagagacgg catccacagc atcacaacac 1681 caatagtcca cagccggcag cagcggccaa gcgaaatcta atcgcatcgc tggagtgcaa 1741 caatgcaagt cgcaaggtct gtgtgaatgg gcagaagctg ctcaagtcgc cgcagaggaa 1801 ggtgcgcgtg ctggaatact cggtgcgtcg gggcaaggga tccggcaggc cgagcacagg 1861 gagcaggaat ccccagaaaa ttcgtcccat accaaaaatc catgtgcgtc cgccgtccgg 1921 cgaggagaac gagagtcccg acgaggaggc ggtcgtggcc atataatgga gctagactct 1981 aatcacatcc aatggcaatc atttcggcaa ctgatctgtg ttctatatct attacctgta 2041 ctgaagtatt tggctcgcaa ttgcagactc atcgtattta tatgtataca catatgtata 2101 gtgttagggc ttttcctagc gcaaagacta tctaaattta caactttaaa attcttttaa 2161 ctattttgca ctacctgtga cggcaagaag taaatgaaca attgtccaca ttttaaattt 2221 ttagtcagat aaaaacgctt gtttacatta taaattactt gatttcaatt ttaccaaaat 2281 atacatgtgt gggaagggtt ttctaaagtc tgtgggatgt ttactaagcg catataagag 2341 aatataatac gtttttaagg agcaaaataa ttaaaataga tattttaatt tgctaataaa 2401 ccaaataacg aatt