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LOCUS NM_001298154 2380 bp mRNA linear INV 26-DEC-2023 (Psf3), mRNA. ACCESSION NM_001298154 VERSION NM_001298154.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2380) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2380) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2380) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2380) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2380) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2380) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2380) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2380) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2380) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2380) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2380) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2380) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2380) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2380) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2380) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2380) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2380) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2380) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2380) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2380) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2380) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2380) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2380) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2380 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2380 /gene="Psf3" /locus_tag="Dmel_CG2222" /gene_synonym="CG2222; Dmel\CG2222; PSF3" /note="Partner of Sld Five 3" /map="9B14-9B14" /db_xref="FLYBASE:FBgn0030196" /db_xref="GeneID:31967" CDS 809..1447 /gene="Psf3" /locus_tag="Dmel_CG2222" /gene_synonym="CG2222; Dmel\CG2222; PSF3" /note="CG2222 gene product from transcript CG2222-RC; CG2222-PC; Psf3-PC" /codon_start=1 /product="partner of Sld five 3, isoform C" /protein_id="NP_001285083.1" /db_xref="FLYBASE:FBpp0312067" /db_xref="GeneID:31967" /db_xref="FLYBASE:FBgn0030196" /translation="MNGMNYFPNYYSIEDIFVTQEKVECRVNTKLQRMGFLDSGAESD DLEPGRTVNLPLWYIKELKVNNAYFTVAVPDIYRNVHKAVCEAETTHIELGRLHPYFY EFGRYLTPYDRNHVIGRIIFETLRQRVRHLLDISKSDGQAAKAEHRLDNIEAKLHEAG VRTNSQYIEWLQMTGNKIRTSELVEEHQKKRRRADRSDDEGDALPNSKRATL" misc_feature 836..1030 /gene="Psf3" /locus_tag="Dmel_CG2222" /gene_synonym="CG2222; Dmel\CG2222; PSF3" /note="beta-strand (B) domain of GINS complex protein Psf3; Region: GINS_B_Psf3; cd21693" /db_xref="CDD:412029" misc_feature order(836..841,845..847,851..859,863..868,899..910, 977..982,989..994,1010..1012) /gene="Psf3" /locus_tag="Dmel_CG2222" /gene_synonym="CG2222; Dmel\CG2222; PSF3" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:412029" misc_feature 1010..1327 /gene="Psf3" /locus_tag="Dmel_CG2222" /gene_synonym="CG2222; Dmel\CG2222; PSF3" /note="Alpha-helical domain of GINS complex protein Psf3 (partner of Sld5 3); Region: GINS_A_psf3; cd11713" /db_xref="CDD:212551" misc_feature order(1115..1117,1124..1126,1181..1183,1193..1195, 1205..1210,1253..1255,1262..1264,1268..1270,1274..1306) /gene="Psf3" /locus_tag="Dmel_CG2222" /gene_synonym="CG2222; Dmel\CG2222; PSF3" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:212551" ORIGIN 1 gggagttaac tgtcaaagtc ctttttcgca cttcaacgct cgtgccttca aacttcttac 61 tgtgaactca aatctcgacc gaacaagttg tgtgctccct atgatttcgt tattaactga 121 tattaactac acacacattt ctctaatcct tgcacacaca tagctaaatc gaaatggctc 181 tttcgaccat ctgtccgttc ctcgtcgcca acaagaaaaa ctcgaagcac gcggctttgc 241 tatttttgat ctcaagtgga ttgatgattt ttaatatggg cgactttatc gacgacttga 301 tgatcatacg gctagattaa gatcaattgt tcgaaattga agtcaaaata gtcattgccg 361 ggaacgaaac ctttattttt atttgttttt gaaagatgca gataagccta agaacttgcg 421 gaagaagtaa ccatctaatt gcaatcgtat cgaattacta ttactaagct gagttcacat 481 gttccacatc atttacaact ttgagtaatt ataccctgac tagtaatttt atgtataaaa 541 aaatgtcaag tgcaggctgc aatttaaaat tcgcgctgaa ataagagtaa ttttccggaa 601 aaactattta catataatac atataaatgc ttcgatatat atagtacata aaacctatcg 661 agtgcctcgg catccaggca aacagctgtt tctgcctcga tagaccccgg caaaatgcat 721 ctaatatcga taggcgatag gtcgcgcact taagaaattg aatttaccta aagtaaacac 781 caaacgaatc ataaagctgg gccgcgcaat gaacggaatg aactattttc cgaactatta 841 ctccatcgag gacatattcg tgacccagga gaaggtggaa tgtcgggtga acaccaagct 901 gcagcggatg ggattcctgg actccggcgc ggaatcggat gacctggagc ccggcaggac 961 ggtcaatctg ccgttgtggt acatcaagga gctgaaggta aacaatgcct acttcaccgt 1021 cgccgtgcca gatatctatc gcaatgtgca taaggccgtc tgcgaggcgg agaccacgca 1081 catcgagctg ggacgcctgc acccgtactt ctacgagttc ggtcgctatc tgacgcccta 1141 cgatcgcaac catgtcatcg gccgcatcat cttcgaaacg ctgcgccaga gggtacgtca 1201 tctcctggac atctcgaaga gcgacggaca ggcagccaag gcggagcatc gactggataa 1261 catcgaggcc aagctgcacg aggctggagt gcgcaccaac agtcagtaca tcgaatggct 1321 gcagatgacg ggcaacaaga ttcgcacctc ggagctggtc gaggagcacc aaaagaagcg 1381 gcgacgtgcg gatcgcagcg atgacgaggg cgatgctctg cccaacagca agcgggccac 1441 cttgtaacaa gcagagtaaa acaacaaaaa cagaccactg atgtactgtg gaactgtagc 1501 aactttattt cgtccattcg ttcggtggcc atagggcagc ctgacctctc aaaaatacac 1561 ttttcatcta ctctatgcac acggctaaat ccatttgtac agttcaaaat acatgggttt 1621 cgcatacatc tacgcataac taagcatcca atccgggacc ggtcttaaac aaaacacata 1681 ggagctgccg ttctgcgttt ttcattgact tggcaataag ccaaagcgat gttgcgccac 1741 attgttacat ataaatagtt aactacatat ataattatat tcttgtaagc tcaattaaaa 1801 tttgattttg tgctagtttc acatacagtt cacaaataaa catatacacc aatgtccagc 1861 gtacataggt agttcgttta aaagcaacca atataggact tctatttcag ggaccgtaat 1921 gcttataagt ctggattgtg ctatttgttt attttggaag agttttcaat ggtataatgt 1981 aatgaactaa gcaagttagg ctaaagcgca caaagtaggc caatatacat atatattata 2041 ctcgtaggtg gaaaatgtaa caaatgtgtt ttttttttca tttctttgat aacctaataa 2101 agataatcta gtaaaacaaa tcaatatcaa attgtctgaa catcagaagc ttcgcaaaat 2161 gagcatatcg aaatatatca aacaagttta cagcatttga atttaaacga taagataaag 2221 aagatactaa tgtagcacaa ttaaaattct gattactaat attcttgtgt cttgtaaaat 2281 atcgtgatat gcaattcaga aaatatatat acatcgtttt ccacttgacc atattctcta 2341 catagatggc cgaaaaatga tctacggtcc ccggttatct