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LOCUS NM_001298151 2979 bp mRNA linear INV 26-DEC-2023 J (CG34408), mRNA. ACCESSION NM_001298151 VERSION NM_001298151.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2979) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2979) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2979) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2979) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2979) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2979) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2979) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2979) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2979) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2979) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2979) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2979) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2979) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2979) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2979) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2979) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2979) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2979) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2979) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2979) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2979) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2979) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2979) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2979 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2979 /gene="CG34408" /locus_tag="Dmel_CG34408" /old_locus_tag="CG2967" /old_locus_tag="CG32689" /old_locus_tag="Dmel_CG2967" /old_locus_tag="Dmel_CG32689" /gene_synonym="BcDNA:GH09358; CG2967; CG32689; Dmel\CG34408; FBpp0111587" /map="9B4-9B4" /db_xref="FLYBASE:FBgn0085437" /db_xref="GeneID:31953" CDS 511..2781 /gene="CG34408" /locus_tag="Dmel_CG34408" /old_locus_tag="CG2967" /old_locus_tag="CG32689" /old_locus_tag="Dmel_CG2967" /old_locus_tag="Dmel_CG32689" /gene_synonym="BcDNA:GH09358; CG2967; CG32689; Dmel\CG34408; FBpp0111587" /note="CG34408 gene product from transcript CG34408-RJ; CG34408-PJ" /codon_start=1 /product="uncharacterized protein, isoform J" /protein_id="NP_001285080.1" /db_xref="FLYBASE:FBpp0309779" /db_xref="GeneID:31953" /db_xref="FLYBASE:FBgn0085437" /translation="MCIFNLHLQPITNVYNPNNHHHHHHQPPTTKHQPLIQIAHVDTL VKIYEASQNLTIISSDALECKRAVKWICDYICYQCSRPPPAHSKDLHSTIVAAFQCTA AWLMQHPYLLQDKDCLQTVLEVVELGISGTKSQSKGTDIPKFKDEKELKPASMRVRDA AENLLTIILEQVGYFPSECGPESISSLLDELALMKHCNSMVPAAAASSEQAIAKFKYF VTENSTILALLEEPLGNDQDPQPTVTLLIRGPFGRHAWTMQLRHLPRSKSGIKYHAIN PGRPIPMNDVTQRLDSEQKNFPDGVDKVQPCVADYSIPTIEQMREQYGTAVIRELESL LENQSIHEKLAWAEADTSADSLSHAQECVPPTVCHEFHAARLFLSHFGFLGFETRNPQ NPAEALGNPPQRPLIVLDTKSAAFAADLDRLDKLSARTHDSVYVFYVKSGQTSAQQII ANMGEESSASHDPHFASMLQTLGWPVQVSEHSGWTGFAHNSWSLKGTPEEQLKSTANE LNYNGSQRVLYWADVSSEIAFVVPTTWNLRYNSDTCDSGSISSTDQIGSSNVWTRGEA DSAAGLAKSKSRNLSLELDTNRRDVKEPVPPTRRKGNVTKPTLLAQAPAKIFLVWLES YEDYLNFPLEDLLAYTRTGEELQTQQLPRASDCHVIFVHSLLSGLLRVKLQGPPGRMS FATPLVDGMVLSRRVVGNLVRQTALNISRRRRLDNDNYQPPHVRRRLKVQDIVQKYKM DLSEADLLAHLFQRAI" ORIGIN 1 ctgatggaat ttatgatata ggattcatta caattgggat accaaatcct ttgcaagagc 61 atcaaaaggc ttcggtggtg caccgaggct gcactttcct ttcctgattt taatgtcgtt 121 tgttttctgt ccacctctgt ttgtttattt tcgaactgtt accatgtgcg tatcctttaa 181 atgttaaatc ccgctgtaaa aacctccaat tatccactta atccacttaa tccctaactg 241 tttgctttgc tgtgcagcca ggaaatttac aaatggtaat tgattgacga agccaactaa 301 cctaactaac gccactttct tctgtctttc tttctttctt ttttttgtcg cgtttctttt 361 tctaaccgcc atcgaaatcg caccaccacc actgcaccac atcccgaata aatcaaaaaa 421 taataaccta ataataataa tatgacccac ctcatccata tcgccatcta tcaactcacg 481 ttgattgcaa tttgtttcta tatataatat atgtgtatat ttaatttgca tctccaaccg 541 ataacgaatg tatataaccc caacaaccac caccaccacc accaccaacc accaaccacc 601 aaacaccaac cactcatcca aatcgcccac gtagacacct tagtgaaaat atacgaagct 661 agtcagaatc taacgataat ctcctcagac gctctagagt gcaagcgggc cgtgaagtgg 721 atctgtgact atatatgcta ccagtgctcc cgtccgccgc cggcgcatag caaggatctg 781 cacagcacca ttgtggcggc ctttcagtgc accgccgcct ggctgatgca gcatccctat 841 ttgctgcagg acaaggattg cctgcaaacg gtcctcgagg tggttgagct gggcatttcg 901 ggcaccaaga gccagagcaa gggcaccgat atacccaaat ttaaggacga aaaggagcta 961 aagcccgcct cgatgagagt gcgagatgct gctgagaatc tgctgacaat tatcctcgag 1021 caagtgggct atttccccag cgaatgcggt ccagagtcca tatcctcgct attggatgag 1081 ctggcgctca tgaagcactg caactctatg gtgccggcgg cggcggccag cagtgagcag 1141 gccattgcca agtttaagta ctttgtgacc gagaactcca ccatattggc actgctcgag 1201 gagccgttgg gcaatgacca ggatccccaa cccacagtga ctctgctcat acgcggtccc 1261 tttggtcgac atgcctggac catgcagttg cgtcatctgc ctcgcagtaa gtctgggatt 1321 aagtaccatg ccattaatcc tggcaggccc atacccatga acgatgtgac gcaacggctg 1381 gatagcgagc aaaagaactt tcccgacggc gtggacaaag tgcaaccgtg tgtggcggac 1441 tactctatac ccaccatcga acaaatgcgc gagcaatacg gcactgctgt catacgggag 1501 ctggagtcgt tgctggagaa ccagagcatt cacgagaaac tggcctgggc ggaggcggac 1561 accagtgcgg atagtttgtc gcatgcccaa gaatgtgtgc cgccaacggt gtgccacgag 1621 ttccatgcgg cgcgtctatt tctctcacat tttggttttc tgggattcga gacgcggaat 1681 ccacagaatc cagctgaggc actgggcaat ccgccacagc gaccgctaat cgtgctggac 1741 accaagtccg cagccttcgc cgccgatctg gatcgtttgg acaagctgag tgcgaggacg 1801 cacgacagcg tttatgtgtt ctatgtgaag agtggccaaa cgagtgccca gcagattatc 1861 gccaatatgg gcgaggaatc gtctgccagc catgatccgc acttcgctag catgctgcaa 1921 acgctgggct ggccggttca ggtttcagaa cactctggct ggacgggctt tgcccacaac 1981 tcgtggtcac tcaagggaac gcccgaggag cagctaaagt ccactgccaa cgagctgaac 2041 tataatggat cacagagggt gctctactgg gcggatgtgt catcggaaat cgccttcgtg 2101 gtgcccacga catggaatct gcgttacaat agcgacactt gcgatagtgg aagtatctcg 2161 agcacggatc agattggctc cagcaatgtc tggacacgcg gagaggccga tagtgcggct 2221 ggcctggcaa aatccaagtc aaggaatctt agcctagaac tcgacacgaa tcgcagggat 2281 gtaaaggagc cagttccgcc gacgcgacga aaaggaaatg tgacgaaacc cacactattg 2341 gcccaggcgc cggccaaaat ctttttggtg tggctggaga gctatgagga ttacctaaac 2401 tttccgctcg aggatctgct agcctataca cgcactggcg aggagctgca gacgcaacag 2461 ttgcctcgcg cctccgactg tcacgtgatc ttcgtgcatt cgttgctctc gggacttctg 2521 agagtaaagt tgcagggtcc accgggaagg atgagctttg ccacgcccct ggtcgatggc 2581 atggtcctga gccggcgggt agtcggaaat ctggttcgac aaacggcatt gaacatatca 2641 cgccgccggc gtctggacaa tgataactac caaccgcctc atgtgcgacg acgactcaag 2701 gtgcaggaca ttgtccagaa gtacaaaatg gatctgagcg aggccgatct gttggcccat 2761 ctgttccaac gcgcaattta gccggctatc ggaagtatta ttaacccgct acctagttta 2821 agagccagag aagtggtctt ttctatattc tgtattaacg tgtgcttaac taaaacccca 2881 aaacaaaact gatccataat cggtgtccac tgagtgttac ccgattgatt atcgtatgct 2941 aattattatt tattgctaat aaatcgaatt atactttgt