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LOCUS NM_001298131 2589 bp mRNA linear INV 26-DEC-2023 B (CG3106), mRNA. ACCESSION NM_001298131 VERSION NM_001298131.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2589) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2589) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2589) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2589) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2589) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2589) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2589) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2589) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2589) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2589) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2589) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2589) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2589) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2589) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2589) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2589) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2589) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2589) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2589) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2589) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2589) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2589) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2589) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2589 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2589 /gene="CG3106" /locus_tag="Dmel_CG3106" /gene_synonym="Dmel\CG3106" /map="8F6-8F6" /db_xref="FLYBASE:FBgn0030148" /db_xref="GeneID:31909" CDS 253..2481 /gene="CG3106" /locus_tag="Dmel_CG3106" /gene_synonym="Dmel\CG3106" /EC_number="2.3.1.-" /note="CG3106 gene product from transcript CG3106-RB; CG3106-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_001285060.1" /db_xref="FLYBASE:FBpp0311996" /db_xref="GeneID:31909" /db_xref="FLYBASE:FBgn0030148" /translation="MMEHFGVLAVVLLIATAVGAQDTSSNYLLTGHSTPLASSFAHQF FTLASQSAELANRTNTQVIQTYEDRNYDDELCDRDINLIRDSINNLEEWALEFPDTWG RLPMGLFWGHTISMGQYEECVAASSTHTTEIRGQYCLASLNITTFYQSVKKRGEEFSR ISYKQTDPEVFELGICVPKTCSAAKTEKLLKYAITHFYGQDVMESNYTMVTEARCKYD APIELRGIDIFAIIFFSLIIFFMVASSVYDYIQTRKGAPKKPLLIAFSVLTNAPKIFT VKKVNNPNVIHCLNGLRCFSMMWVVFGHGYMTFYDLPHINKNKFYTWVQTPYSMLVQN GSLCVDTFFFMSGLLMCWGAFREMERTKGKLNIPMMYFHRYIRLTPVVAVVVLYIMSL YKYSGAGPMWFKLGTQDKRCADTWWATLIYVQNYAFPYSICISQSWYLAVDTQLYFLS PLFLIPLWKWGKKALVPIVIVLILCLGGTFATFMLNDFTLFRVQDDQVDLRQRLTYYP THTRIPTWLIGVIFGYFLFTRNRGRQIPMSKPLVLTGWFVAFGTMLACMWGPYWRILP DTPDSPLIEGAFFEPLSRTSWALSIGWIVWACYNGHGGLVNDFLSWGFFTGFSRLCYC MYVIHRIVQLVNAARLQTDTHFSNYDAILRWWHDFGITLTASIFATLAFEAPILGIEK AIFGKPAPKKPSPGELAKAAPVAATSASAEPEPEAKPESVVETKTEIAPVPTNEENPS KA" misc_feature 523..903 /gene="CG3106" /locus_tag="Dmel_CG3106" /gene_synonym="Dmel\CG3106" /note="N-terminal domain in C. elegans NRF-6 (Nose Resistant to Fluoxetine-4) and NDG-4 (resistant to nordihydroguaiaretic acid-4); Region: NRF; smart00703" /db_xref="CDD:214781" misc_feature 1108..2322 /gene="CG3106" /locus_tag="Dmel_CG3106" /gene_synonym="Dmel\CG3106" /note="Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains [Cell wall/membrane/envelope biogenesis]; Region: OafA; COG1835" /db_xref="CDD:441440" ORIGIN 1 ggcgggcgtt gcttggtcat cgctagaact gcccactcaa gtgcccactc cagtcgtttc 61 gaaaacggaa cggaaccgaa ctcaagcgaa aacaaaaaaa aaaagaaaca ctagcctata 121 aaaggcatgc gatctttgcg atcgcccact cagtaacacg aaccaccctc aggtggccgc 181 ggcgcgcact ccagatccct aatcccagat cactaatcac tatacccacc gacaatccac 241 gcaaaaggat ttatgatgga gcatttcggt gtcctggccg tcgtgctgct gatcgcgact 301 gctgtcggtg cccaggatac ttcgtccaac tatctgctca ccggtcactc aactccgctg 361 gccagcagct ttgcccacca gttctttacc ttggcctcgc aaagcgctga gctcgccaat 421 aggacgaaca cccaggtgat tcaaacctac gaggatcgca actacgacga tgagctctgc 481 gatcgggata tcaacctaat cagggattca atcaacaact tggaggagtg ggcactggaa 541 tttcccgaca catggggtcg tttgcccatg ggtctcttct ggggacacac catcagcatg 601 ggtcagtacg aggagtgcgt agcagctagc tctacccaca ccacagagat tcgtggacag 661 tattgcttgg ctagtttgaa cataactacg ttttatcaat cggttaagaa acgcggcgaa 721 gagttctcac gtattagcta taagcaaaca gatccggaag tctttgagct tggcatttgt 781 gttccaaaga catgcagtgc tgcaaagacc gaaaaattgc tcaagtacgc tatcacccac 841 ttttatggac aggatgtgat ggaatcaaac tacacaatgg tgacggaagc gcgctgcaaa 901 tacgatgcac ccatcgagct gcgcggcatt gacatattcg caatcatttt cttctcgctg 961 atcatcttct tcatggttgc cagcagtgtc tacgattata ttcagacccg caaaggagcc 1021 cccaaaaagc cactgctgat cgcgttttct gtactgacaa atgcccccaa aattttcacc 1081 gttaagaagg tgaacaatcc caatgtgatt cactgcctaa atggattgcg ttgctttagt 1141 atgatgtggg tggtatttgg ccacggctat atgaccttct acgatctgcc acacatcaac 1201 aaaaacaaat tctacacctg ggtgcagacc ccctattcga tgttggtcca gaacggctcg 1261 ctttgcgtgg acacgttctt cttcatgtcc ggtctgctga tgtgctgggg tgccttccgt 1321 gaaatggagc gcaccaaggg caagctaaac atcccgatga tgtatttcca tcgctacatt 1381 cgacttacgc cagtggtggc cgtcgtcgtt ctgtacatta tgtcactgta taagtactcg 1441 ggcgccggac ccatgtggtt caagctgggc acccaggata agaggtgtgc cgacacctgg 1501 tgggcaacgc tgatctacgt ccagaactat gccttcccct acagcatttg catatctcaa 1561 tcgtggtatt tggccgtgga cacccagctg tacttccttt cgccgctgtt cctcattccg 1621 ctgtggaaat ggggaaagaa ggccttggtg cccatcgtga tcgtactgat cttgtgcttg 1681 ggtggaactt tcgccacctt tatgttgaat gactttacgc ttttccgcgt gcaggacgat 1741 caagtggatc tgcgacagcg gttgacctac tatccaacgc acactcgaat tcccacttgg 1801 ttgattggcg tgatctttgg ctacttcctg tttacccgta accgtggacg ccagattccg 1861 atgtccaagc cactggtgct gaccggttgg ttcgtggcct tcggaacgat gttggcctgc 1921 atgtggggac catactggcg catcctgccg gatactcccg actcgcccct gatcgaaggc 1981 gcattctttg agcccctgag cagaacgtcg tgggctctgt ccattggttg gatcgtttgg 2041 gcctgctaca atggtcacgg cggtctggtc aatgacttct tgtcctgggg attcttcacg 2101 ggcttcagcc gactgtgtta ctgtatgtac gtcattcatc gcattgtcca gctggtcaac 2161 gccgctcgtc tgcagacaga tacccacttc tccaactacg atgcgatcct ccgctggtgg 2221 catgactttg gcatcaccct caccgcctcg atcttcgcca ccttggcctt cgaggcaccc 2281 attttgggca tcgagaaggc catattcggc aagccggcgc ccaagaagcc atctcccgga 2341 gagctggcca aggctgcccc ggtggcagcc acttctgctt ccgctgaacc ggaaccggaa 2401 gccaaacccg agtccgttgt ggagaccaag acggaaatag cgcccgttcc caccaacgaa 2461 gagaatccat ccaaggccta gactctgcag ccttagcacg attttttttt caccatgcga 2521 accaattttt tgtgtgtagt tagtttaatt tattaaacat tttaaacaat aaaacgattc 2581 atgtattta