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LOCUS NM_001298119 2970 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001298119 VERSION NM_001298119.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2970) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2970) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2970) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2970) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2970) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2970) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2970) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2970) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2970) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2970) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2970) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2970) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2970) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2970) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2970) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2970) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2970) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2970) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2970) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2970) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2970) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2970) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2970) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2970 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2970 /gene="ric8a" /locus_tag="Dmel_CG15797" /gene_synonym="CG15797; Dmel\CG15797; DmRic8; l(1)G0397; ric-8; Ric-8; RIC-8; ric-8a; Ric-8A; Ric8a" /map="8D3-8D3" /db_xref="FLYBASE:FBgn0028292" /db_xref="GeneID:31874" CDS 130..1851 /gene="ric8a" /locus_tag="Dmel_CG15797" /gene_synonym="CG15797; Dmel\CG15797; DmRic8; l(1)G0397; ric-8; Ric-8; RIC-8; ric-8a; Ric-8A; Ric8a" /note="CG15797 gene product from transcript CG15797-RB; CG15797-PB; ric8a-PB" /codon_start=1 /product="ric8a, isoform B" /protein_id="NP_001285048.1" /db_xref="FLYBASE:FBpp0311994" /db_xref="GeneID:31874" /db_xref="FLYBASE:FBgn0028292" /translation="METEHLKRLEAKEADHIPAILDEFNTKNADLLVFDSFRTDNLWH ELWLAIFGILDDQRLSHLHTQCLNTVRILTRDEFSLQTNYIEQEVNTLLKLARIEAGS LKLPATPDELKQEEREEPQLEPSQAQSEVIAEALKCLCNLVYQSSDCRRQCLRQHCLD AILKRVASSMRHPCALEYYDMKLLFLLTALEPAARSRLQIDLNGLTYMTKWLDDKLGE DSVGEEQLNIICELLKVMFNVTSAPDKSPNEYEIQSLHLTGVLRELLLRFGDLATEKD RAVVTHAINLLTNISGSCLTELTLRCSNAELESHKEREQDNEKEKDTEAGAGAKPREC CSQCFEKRNVRSLDVLLRYLRQSLAQQEAEASSHELLSPVLTVLVKCARSDRVMRHYL RQEILPPLRDVSQRPEVGQELRNHLCRFLTLPAMILRDLSAELLFVLCKENVGRMIKY TGYGNAAGLFAKRGILDCRRVEGTDYSSDSEDSDTEEYKQQQQGINPVLGCVEPRSKS HLDDISEEQKEYEAMQLVNLIEQLRQGGIVKPAMIDKDGRPQPLEHILQLQEELPQQQ LDQKRKT" misc_feature 325..1731 /gene="ric8a" /locus_tag="Dmel_CG15797" /gene_synonym="CG15797; Dmel\CG15797; DmRic8; l(1)G0397; ric-8; Ric-8; RIC-8; ric-8a; Ric-8A; Ric8a" /note="Guanine nucleotide exchange factor synembryn; Region: Ric8; pfam10165" /db_xref="CDD:462973" ORIGIN 1 ccgtagtata ttagattaga acggcaaagg tgcggtcaca ctggcggaaa ttataaaaat 61 taattaaatt aacttaaacg acctaaaaag cgaactcaac gacagctttg aacggccacc 121 gttggcgaca tggaaacgga gcacctgaaa cgactagagg ccaaggaggc ggaccacatt 181 cccgccatcc tggacgaatt caacacaaag aatgcggatc tgctggtctt cgacagtttc 241 cgcacagaca acctgtggca cgaactgtgg ctggccatct tcggcatatt ggacgaccag 301 cggcttagtc atctgcatac gcagtgcctg aacacggtga ggattctaac gcgtgacgag 361 ttcagcctgc agacgaacta catcgaacag gaggttaaca ccctgctgaa gctggctagg 421 attgaggccg gctcactaaa gctgccagcc acgccggacg agcttaaaca ggaggaacgc 481 gaggagcccc agctggagcc cagccaggcc caatcggagg tgattgccga agcacttaag 541 tgtctgtgca acttggtcta ccagagctcc gactgcaggc gccagtgcct gcggcaacac 601 tgcctggatg caatcctgaa gagggtggcg tcctcgatgc gacatccctg tgcgttggag 661 tactacgaca tgaagctcct cttcttgctc actgcattag agccagcggc gcgctctcgc 721 ctccaaatcg atctgaatgg cctcacctac atgactaagt ggctggacga caagctgggc 781 gaagactcag ttggcgagga gcagctgaac atcatctgcg aactgctcaa ggtgatgttc 841 aacgtgacca gtgctccgga caagagcccc aacgaatacg aaatccagag cttgcatttg 901 acgggagtgc tgagggagct actcctgcgt ttcggcgact tggccacaga aaaggatcgc 961 gccgtcgtca cacacgccat caatctgctg acaaacatct ccggcagctg cctgacagaa 1021 ctcaccctgc gttgctccaa tgccgagttg gagtcgcaca aggaaagaga gcaggacaac 1081 gagaaggaaa aagatacaga agctggagcg ggagccaaac cccgtgagtg ctgctcgcag 1141 tgcttcgaaa agcgcaatgt tcggagtctg gacgtgctac tccgctacct aaggcaatct 1201 ctggcccaac aggaggccga ggctagctcg catgagttgc tttccccagt gctgaccgtg 1261 ctggtgaaat gtgcgcgcag cgatcgagtt atgcgtcact atctacgcca ggagattctg 1321 ccgccgctgc gggacgttag tcaacgacct gaggttggtc aggagctgcg caatcatctg 1381 tgtcggttcc ttacactgcc cgcgatgatc ctacgagatc tgtccgccga actgctgttc 1441 gtactgtgca aagaaaatgt cggcaggatg atcaaatata cgggctatgg caacgcagcc 1501 gggctctttg ccaagcgggg tatactcgac tgccggcgag tggagggcac cgactactcc 1561 tccgacagcg aggacagcga caccgaggag tacaagcagc agcagcaggg catcaatcca 1621 gtccttggct gcgtagagcc gcgcagcaag tcgcatctgg acgacataag cgaagagcag 1681 aaggaatacg aggctatgca gctggtcaat ctcatcgaac agctgcgtca gggcgggatc 1741 gtaaagccgg cgatgataga caaggacggg cgcccgcagc cgctggaaca catccttcag 1801 ctgcaggagg agctgccgca gcagcagctc gaccagaagc ggaaaaccta agccacaaat 1861 gtattgcggg atctgctatg gcacaacttc caaatagcta ccaaaaaatc accttaaact 1921 ctgcatttat tccataagtt tactgtcgaa tgtagcttcg aatgtgttca aaaagcagat 1981 tttttttttt acatagttta tatattttat accacatatt cgagaacatc tcattataac 2041 ctacaatttg ttaaccaaaa attatccaat ctggctttga tttcagtgat cagcttttgt 2101 ctaaatgcca ttattattag tgttagctaa aataattata atctatccaa ttagcttcaa 2161 ttcgtagata agttcggtct cccaactttt acagaatttc tttaaccatt aaccatgtag 2221 aacgttgtac ttattaagtt attacgcact tcgttgttat tttgttgtcc cgtgaattgt 2281 tcgcactttt aaagttgata ccatggcatc ccataacgta cggcttgaaa aaaataacta 2341 aatgcaaaac aatcgttggg gtcttccaat ttcaggaagt agggagcaga tgaacatcaa 2401 atctgaattc atttaaatac acgcccacac tataggacaa ctaggacgac ttttcatttt 2461 aatagttaag tgcatgtatg tattatattt ataaaattcc aattatacac ttaggatcta 2521 ggaatgaaag ctcttattcc gattctcagt tttctattac aaatgatgtt gcatgtgtgt 2581 aacactaact atagctctag aatcgaacta aacgaactac aaagtctatc tatgacagac 2641 ggcagtgagg agcacttgaa gagccatcaa gttgtggatg tcgacacggc catgcaacca 2701 actatcccat ccgcacattg ttcatgtcca tgtctaatct atgttgtaaa ttccgcataa 2761 tagggtaaag gaataattcc aaaactttct aaaagttacg tgtctttgat ctatatacaa 2821 gaaatcctat ctagagcttt attgtgttca atttgctata gcgatgatac tagtagatca 2881 acttatatac atcaaaacat agtaatattt tttgtgcgag tctaaatgta cggctatcct 2941 aagcttaaca ataaaataaa tcaatcaagg