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LOCUS NM_001298088 3773 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_001298088 VERSION NM_001298088.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3773) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3773) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3773) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3773) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3773) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3773) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3773) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3773) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3773) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3773) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3773) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3773) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3773) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3773) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3773) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3773) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3773) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3773) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3773) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3773) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3773) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3773) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3773) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3773 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3773 /gene="Miga" /locus_tag="Dmel_CG12125" /gene_synonym="CG12125; Dmel\CG12125; miga" /note="Mitoguardin" /map="7E9-7E9" /db_xref="FLYBASE:FBgn0030037" /db_xref="GeneID:31775" CDS 1474..3051 /gene="Miga" /locus_tag="Dmel_CG12125" /gene_synonym="CG12125; Dmel\CG12125; miga" /note="CG12125 gene product from transcript CG12125-RC; CG12125-PC; Miga-PC" /codon_start=1 /product="mitoguardin, isoform C" /protein_id="NP_001285017.1" /db_xref="FLYBASE:FBpp0311873" /db_xref="GeneID:31775" /db_xref="FLYBASE:FBgn0030037" /translation="MQRVMPASWSSGGSLLPFRVSTTTKVVLFSLTAGVALMSVLSRF LRRRKPPRPPRRARKYTGRRNRNSMRSPNDLISIAGSKASARSGSPVGSTLAYSDRLS MASGSIGVGVLGVQNAGPGSSVVTQLTAQQLGMMGMEALDTVINFWEDALAAHYSPGG LPALLTTAEDSEFCREIQNLLEMAYTLQEQSELLFLDQRSVLFREEHSIDEAEEEAGE ADDDRRSRKSGSVLSRAGSDPNFDSAESFASALDQVADLREFDGFIETSYEEYPLFQS ALKHHDEYTVPCRTIRAELMHCSTDTEYLAKLHCVRLAFQFLFKDPAVGQWICDAGRQ ILTDLLCLGDKDTKEFLVGYEDMVNYLHDSNNWPCIQMELEQRNVKAMTFYDICLDFI ILDSFKDLDAPPASVTAVVQNRWLSNGFKETALTTAVWSVLKAKKRMLKFPNGFMSHF YVISEQISPLMAWGFFGPNENLRDICHYFREELLAFLGDIFSFQKSRFTTIEEFSQDV LQHMQTRVNNIGVKFSQ" misc_feature 1510..3042 /gene="Miga" /locus_tag="Dmel_CG12125" /gene_synonym="CG12125; Dmel\CG12125; miga" /note="Mitoguardin; Region: Miga; pfam10265" /db_xref="CDD:463034" ORIGIN 1 cgtgcgaaag agagggcgat gcaattaagc aaaaccagtt taacgggact cgcacacaca 61 taagtacgca catatgcatg tagcgggtga ggagcgagcg atgaaacgga ggaaaacgaa 121 gaaggaagag gaggcgaagg agagagagga caggcaaagt gccgttttaa cagctttcgc 181 ggaaagccgg cacaaaaaca atctaaacaa actaaaaaga aggaaaaaca aaaacctgtt 241 tgtccagttt gacaaacaaa aaacgtgagg aaaaaaaaaa caaacaaaaa tttgggtgaa 301 attttacttt cgtctggttt taatttgttt ttgttgctgg ggcgtcagca aaaactacca 361 tccctttccc tctttcgctc ctacactcac acacacacac agccgcacac cacagcaaca 421 acaaataaag aatgtcgccg gaaattagtt tcacttaaaa gttgttaatt ttcactctaa 481 gtacgtgcat tttatgcaag actcttcctt tcgtttatta acttacacat atttaatggt 541 tttttctcct ttcttttgtg attttacact tgttttgatt ttataaggtc acttcgaatt 601 ttgctcgacc cagatttgga tgtccttcag ttttccgaac tcctgaccac ttctggctac 661 tgcagtcgta ctatgcgcaa tttggataat ttttttaatt tgattttatt ttggtttgct 721 gtggagtgtt ttttttgttt cctaatagta tgaccataca atgaaccctc ttttatacca 781 tccggctttc aaaaaaatat acttttaata ccacattgga ttgccatacg atataccggt 841 aatataccaa cttctttaaa ttattaagca ctgttttaat acaccgaatt tcataaatgt 901 tccatacata taagcgtatt aatttataaa tcaaactgta actgttatat cgatctgttg 961 atctggcagc gtcgttggac ctaggcctag gcctatcaaa aacccatatg gcaacacccc 1021 aatcagctgg atcttttgcc gccgtgctct tctcttcgta aaacgttgtg atgcaatttt 1081 gttgttttca tgtctaaaag tgaaagttgc cactgataag aggcagtaga ctgagactcc 1141 gacgtaaaat ttatccgtgg tgaccccgtt tcgtgtcagc caggcgacga ggccagcgtt 1201 tggaccagcc cccaactgaa accagccgtt ctgcatctgc attccaaagg gcggccgcac 1261 atggagcgca gggtcaaagc cgcgccagaa aaccaaaacc aagatagcac ccgccgatga 1321 gcgggcatcg aggagtgggc gcggaggtct aacctcaaag cacaagcaca atccgcagca 1381 tcagcacaca acgaatcctt gctattcaca ccattcccta tctcgattcc gaagtattca 1441 caggatccaa ggcgtagtca tcatagccgc aggatgcagc gcgtcatgcc ggcgtcctgg 1501 agcagcgggg gcagcctgct gccctttcgc gtttccacca ccacaaaggt tgtgctcttc 1561 tcactgaccg ccggcgtggc cctaatgagc gtactctccc gatttctgcg acgtcgcaag 1621 ccaccgcgtc cgcctcgtcg agccaggaag tacacgggtc ggcgcaaccg caacagcatg 1681 cgcagtccaa acgatctaat ctcgatagcc ggatctaagg cctcggccag atcggggagt 1741 cctgtgggct ccacactggc ctactcggat cgcctgtcca tggcgtccgg ctcgattggc 1801 gttggtgtat tgggcgtaca aaatgccggt cctggcagct cggtagtcac acaactgacg 1861 gcccaacagt tgggcatgat gggcatggag gcactggaca cagtgatcaa cttctgggag 1921 gatgccctgg cggcacacta ctcgcccggc ggtttgcccg ccctgttgac cacggcggag 1981 gactccgagt tctgtcgcga gatccaaaac ctgctggaga tggcctacac gctgcaggag 2041 cagagcgaac tgctcttcct ggaccagcga tcggtgctgt tccgcgagga gcattccatt 2101 gacgaggccg aggaggaggc gggcgaggcc gatgacgatc ggcggtcacg caaatcgggc 2161 agcgttctca gtcgcgctgg ttccgatccg aactttgatt ccgcggaaag ctttgcttcc 2221 gctctcgacc aggtggcgga tctgcgtgag ttcgatggct ttattgagac ctcgtacgaa 2281 gagtatccgc tattccagag tgcactgaag catcacgatg agtacacggt gccgtgtcgt 2341 accattcggg cggagttgat gcactgcagc accgataccg aatacctggc caagctgcac 2401 tgcgttcggt tggcctttca gttcctcttc aaggatcccg ctgtgggcca gtggatctgc 2461 gatgctggtc ggcagattct caccgatctg ctttgtctgg gcgataagga taccaaggag 2521 tttcttgtgg gctacgagga catggtgaac tatctgcacg atagcaacaa ctggccctgc 2581 atccaaatgg agctggagca gcgcaatgtc aaggcgatga ccttctacga tatctgtttg 2641 gacttcatta tcctcgattc gttcaaggat cttgatgctc cgcctgccag cgtaacagcg 2701 gttgtccaaa atcgctggct atccaacgga ttcaaagaga cggcattaac aacagccgtg 2761 tggtcggtgc tgaaggcaaa gaaacggatg cttaagttcc ccaacgggtt catgtcccac 2821 ttttacgtga tatccgagca gatatcaccg ctaatggcct ggggcttctt tggacccaac 2881 gagaacttgc gcgacatctg ccactacttc cgagaggagc tgctcgcctt tctgggcgac 2941 atctttagct tccaaaagag ccgcttcacg accatcgagg aattctcgca ggatgtgctg 3001 cagcacatgc agacgcgcgt caacaacatt ggcgtgaaat ttagccagta actggcgttc 3061 actttagcta gccttctatc catacttctt ggactcccct tctatatatt ttttacaaaa 3121 accatttggt tcggtagttt ccctaagaaa tgctccacaa gttgactaat tttaaagcca 3181 catacatcca gccacacgta caccaaatcc acgcatcgtc attgtatgaa taagctgcat 3241 ttaagtcacc aaaacatttg taaaataaaa ctgtttaccg cccgctccga gcgagaatcc 3301 agctgaaata cctccgattg catgggtaaa gtggatccag gtgacagacg cgctgcatac 3361 cctgttatac tatgttattc agtgatacat ttagtacaca cactcaaata accacgcaca 3421 aactatacta aatttgagag tcagacatga actagttatt ttatgacatt aagaccattg 3481 aaaggagttg gctgttttgt tgtttaaatc ctactaaact gtaaaactat atattagttt 3541 aataatctga gattattgat atagacatgt actcttaatg tttcgatatt tttcaaaacg 3601 ataacaaaat attgcagata gggaatcagt taaaatactt cagttttccg actaacgacc 3661 aattgttttt tccagtgatg aatctaaaaa ttgaagtagt atcccccata gaaatgattt 3721 ttgtaaaatt atgaactctg aattatgtga aatatagtgg tcagatgctg agt