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Drosophila melanogaster nicotinic acetylcholine receptor alpha3,


LOCUS       NM_001298086           10506 bp    mRNA    linear   INV 26-DEC-2023
            transcript variant C (nAChRalpha3), mRNA.
ACCESSION   NM_001298086
VERSION     NM_001298086.1
DBLINK      BioProject: PRJNA164
            BioSample: SAMN02803731
KEYWORDS    RefSeq.
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (bases 1 to 10506)
  AUTHORS   Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St
            Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K.,
            Strelets,V., Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: Impact of
            High-Throughput Data
  JOURNAL   G3 (Bethesda) 5 (8), 1721-1736 (2015)
   PUBMED   26109357
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10506)
  AUTHORS   Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St
            Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B.,
            Russo,S.M. and Gelbart,W.M.
  CONSRTM   FlyBase Consortium
  TITLE     Gene Model Annotations for Drosophila melanogaster: The
            Rule-Benders
  JOURNAL   G3 (Bethesda) 5 (8), 1737-1749 (2015)
   PUBMED   26109356
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 10506)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I.,
            Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R.,
            Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G.,
            Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N.,
            Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A.,
            Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E.
  TITLE     The Release 6 reference sequence of the Drosophila melanogaster
            genome
  JOURNAL   Genome Res 25 (3), 445-458 (2015)
   PUBMED   25589440
REFERENCE   4  (bases 1 to 10506)
  AUTHORS   Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M.,
            Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F.,
            Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E.
  TITLE     Sequence finishing and mapping of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1625-1628 (2007)
   PUBMED   17569867
REFERENCE   5  (bases 1 to 10506)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  TITLE     The Release 5.1 annotation of Drosophila melanogaster
            heterochromatin
  JOURNAL   Science 316 (5831), 1586-1591 (2007)
   PUBMED   17569856
  REMARK    Erratum:[Science. 2007 Sep 7;317(5843):1325]
REFERENCE   6  (bases 1 to 10506)
  AUTHORS   Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D.,
            Ashburner,M. and Anxolabehere,D.
  TITLE     Combined evidence annotation of transposable elements in genome
            sequences
  JOURNAL   PLoS Comput Biol 1 (2), 166-175 (2005)
   PUBMED   16110336
REFERENCE   7  (bases 1 to 10506)
  AUTHORS   Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A.,
            Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A.,
            Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W.,
            Celniker,S.E., Rubin,G.M. and Karpen,G.H.
  TITLE     Heterochromatic sequences in a Drosophila whole-genome shotgun
            assembly
  JOURNAL   Genome Biol 3 (12), RESEARCH0085 (2002)
   PUBMED   12537574
REFERENCE   8  (bases 1 to 10506)
  AUTHORS   Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J.,
            Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E.,
            Rubin,G.M., Ashburner,M. and Celniker,S.E.
  TITLE     The transposable elements of the Drosophila melanogaster
            euchromatin: a genomics perspective
  JOURNAL   Genome Biol 3 (12), RESEARCH0084 (2002)
   PUBMED   12537573
REFERENCE   9  (bases 1 to 10506)
  AUTHORS   Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S.,
            Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E.,
            Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L.,
            Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D.,
            Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J.,
            Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M.,
            Rubin,G.M. and Lewis,S.E.
  TITLE     Annotation of the Drosophila melanogaster euchromatic genome: a
            systematic review
  JOURNAL   Genome Biol 3 (12), RESEARCH0083 (2002)
   PUBMED   12537572
REFERENCE   10 (bases 1 to 10506)
  AUTHORS   Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W.,
            Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E.,
            Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M.,
            Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S.,
            Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M.,
            Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W.,
            Gibbs,R.A. and Rubin,G.M.
  TITLE     Finishing a whole-genome shotgun: release 3 of the Drosophila
            melanogaster euchromatic genome sequence
  JOURNAL   Genome Biol 3 (12), RESEARCH0079 (2002)
   PUBMED   12537568
REFERENCE   11 (bases 1 to 10506)
  AUTHORS   Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
            Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
            George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
            Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
            Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
            Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
            Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
            Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M.,
            Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S.,
            Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P.,
            Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A.,
            Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B.,
            Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I.,
            Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S.,
            Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C.,
            Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S.,
            Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z.,
            Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J.,
            Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J.,
            Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z.,
            Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C.,
            Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A.,
            Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C.,
            McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C.,
            Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L.,
            Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K.,
            Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S.,
            Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K.,
            Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I.,
            Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C.,
            Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R.,
            Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A.,
            Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT,
            Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F.,
            Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H.,
            Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O.,
            Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C.
  TITLE     The genome sequence of Drosophila melanogaster
  JOURNAL   Science 287 (5461), 2185-2195 (2000)
   PUBMED   10731132
REFERENCE   12 (bases 1 to 10506)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R.,
            Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R.,
            Smith,E., Yu,C. and Rubin,G.
  CONSRTM   Berkeley Drosophila Genome Project
  TITLE     Drosophila melanogaster release 4 sequence
  JOURNAL   Unpublished
REFERENCE   13 (bases 1 to 10506)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   14 (bases 1 to 10506)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   15 (bases 1 to 10506)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   16 (bases 1 to 10506)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2020) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   17 (bases 1 to 10506)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2019) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   18 (bases 1 to 10506)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAY-2018) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   19 (bases 1 to 10506)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2016) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA
REFERENCE   20 (bases 1 to 10506)
  AUTHORS   Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R.,
            Park,S., Svirskas,R. and Karpen,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne
            Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   21 (bases 1 to 10506)
  AUTHORS   Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S.,
            Svirskas,R. and Rubin,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2006) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road, MS
            64-121, Berkeley, CA 94720, USA
  REMARK    Direct Submission
REFERENCE   22 (bases 1 to 10506)
  AUTHORS   Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H.
  CONSRTM   Drosophila Heterochromatin Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project,
            Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron
            Road, Mailstop 64-121, Berkeley, CA 94720, USA
REFERENCE   23 (bases 1 to 10506)
  AUTHORS   Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive,
            Rockville, MD 20850, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by FlyBase. This
            record is derived from an annotated genomic sequence (NC_004354).
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 6.54
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10506
                     /organism="Drosophila melanogaster"
                     /mol_type="mRNA"
                     /db_xref="taxon:7227"
                     /chromosome="X"
                     /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2]
                     bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]"
     gene            1..10506
                     /gene="nAChRalpha3"
                     /locus_tag="Dmel_CG2302"
                     /gene_synonym="Acr7E; alpha3; CG2302; Da3; Dalpha3;
                     Dalpha3 nAChR; Dmel\CG2302; D[a3]; lincRNA.965; nAChR;
                     nAchRalpha3; nAcRalpha-7E; nACRalpha-7E; nAcRe; nicra3"
                     /note="nicotinic Acetylcholine Receptor alpha3"
                     /map="7E1-7E4"
                     /db_xref="FLYBASE:FBgn0015519"
                     /db_xref="GeneID:31767"
     CDS             1362..3749
                     /gene="nAChRalpha3"
                     /locus_tag="Dmel_CG2302"
                     /gene_synonym="Acr7E; alpha3; CG2302; Da3; Dalpha3;
                     Dalpha3 nAChR; Dmel\CG2302; D[a3]; lincRNA.965; nAChR;
                     nAchRalpha3; nAcRalpha-7E; nACRalpha-7E; nAcRe; nicra3"
                     /note="CG2302 gene product from transcript CG2302-RC;
                     CG2302-PC; nAChRalpha3-PC; drosophila alpha-like subunit
                     3; nAcRalpha-7E; nicotinic acetylcholine receptor alpha
                     7E; Dalpha3"
                     /codon_start=1
                     /product="nicotinic acetylcholine receptor alpha3, isoform
                     C"
                     /protein_id="NP_001285015.1"
                     /db_xref="FLYBASE:FBpp0308714"
                     /db_xref="GeneID:31767"
                     /db_xref="FLYBASE:FBgn0015519"
                     /translation="MKWFQVTIDMILVLSFISSSTANPDAKRLYDDLLSNYNKLVRPV
                     VNVTDALTVRIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHV
                     PSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFD
                     EQTCVMKFGSWTYDGFQVDLRHIDELNGTNVVEVGVDLSEFYTSVEWDILEVPAVRNE
                     KFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLS
                     ISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQ
                     THTMAPWVRTVFINQLPRFLVMRRPLYPISEMIKSSRRLMVRTCNGLELRDQIPPLPP
                     PVALSRMHHSPKTTSRSTSPHLQHRVQTYNLMDECGMGMGGGASTITGHLSSLYPPTM
                     STANQQTSTTSSLIDAQYHNQYQQTGGSLLDHPLTPTKFRQMTSTSSQTGQNGSGNGN
                     GNGGYGGHGQSGGHHLYRQQSSCSANFSPLPQHAHQAHASTTTSDLGMANPNVIKSTT
                     TVNSVATASTLADSCCSGTIQIHQGMGAGAACQSSELLHHQQLHHQQMHHQQQQQQQQ
                     QHHHHQRPTTSAAAAAAAAAAGGPSTSAAAAAAAAAAAAGTPPPPPPPAGVCDILPAC
                     QREGGPHCCSGRGNVRQRWHTCPELHKAMDGVTYIADQTRKEEESTRVKEDWKYVAMV
                     LDRLFLWIFTIAVVVGTAGIILQAPTLYDTRMPIDIKLSEIASTTAKPNVARPVL"
     misc_feature    1434..2090
                     /gene="nAChRalpha3"
                     /locus_tag="Dmel_CG2302"
                     /gene_synonym="Acr7E; alpha3; CG2302; Da3; Dalpha3;
                     Dalpha3 nAChR; Dmel\CG2302; D[a3]; lincRNA.965; nAChR;
                     nAchRalpha3; nAcRalpha-7E; nACRalpha-7E; nAcRe; nicra3"
                     /note="extracellular domain of nicotinic acetylcholine
                     receptor subunit alpha-like found in protostomia; Region:
                     LGIC_ECD_nAChR_proto_alpha-like; cd19031"
                     /db_xref="CDD:349832"
     misc_feature    order(1542..1544,1548..1550,1566..1571,1590..1592,
                     1656..1658,1662..1664,1689..1694,1698..1700,1704..1709,
                     1719..1721,1725..1730,1740..1748,1752..1754,1782..1784,
                     1788..1790,1794..1796,1806..1808,1872..1874,2079..2081)
                     /gene="nAChRalpha3"
                     /locus_tag="Dmel_CG2302"
                     /gene_synonym="Acr7E; alpha3; CG2302; Da3; Dalpha3;
                     Dalpha3 nAChR; Dmel\CG2302; D[a3]; lincRNA.965; nAChR;
                     nAchRalpha3; nAcRalpha-7E; nACRalpha-7E; nAcRe; nicra3"
                     /note="pentamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:349832"
     misc_feature    1809..1853
                     /gene="nAChRalpha3"
                     /locus_tag="Dmel_CG2302"
                     /gene_synonym="Acr7E; alpha3; CG2302; Da3; Dalpha3;
                     Dalpha3 nAChR; Dmel\CG2302; D[a3]; lincRNA.965; nAChR;
                     nAchRalpha3; nAcRalpha-7E; nACRalpha-7E; nAcRe; nicra3"
                     /note="Cys-loop [structural motif]; Region: Cys-loop"
                     /db_xref="CDD:349832"
     misc_feature    2085..>2354
                     /gene="nAChRalpha3"
                     /locus_tag="Dmel_CG2302"
                     /gene_synonym="Acr7E; alpha3; CG2302; Da3; Dalpha3;
                     Dalpha3 nAChR; Dmel\CG2302; D[a3]; lincRNA.965; nAChR;
                     nAchRalpha3; nAcRalpha-7E; nACRalpha-7E; nAcRe; nicra3"
                     /note="transmembrane domain of nicotinic acetylcholine
                     receptor (nAChR); Region: LGIC_TM_nAChR; cd19064"
                     /db_xref="CDD:349866"
     misc_feature    2085..2159
                     /gene="nAChRalpha3"
                     /locus_tag="Dmel_CG2302"
                     /gene_synonym="Acr7E; alpha3; CG2302; Da3; Dalpha3;
                     Dalpha3 nAChR; Dmel\CG2302; D[a3]; lincRNA.965; nAChR;
                     nAchRalpha3; nAcRalpha-7E; nACRalpha-7E; nAcRe; nicra3"
                     /note="TM1 helix [structural motif]; Region: TM1 helix"
                     /db_xref="CDD:349866"
     misc_feature    order(2181..2183,2190..2192,2202..2204,2211..2216,
                     2223..2225,2235..2237,2319..2321,2328..2330,2337..2342,
                     2346..2354)
                     /gene="nAChRalpha3"
                     /locus_tag="Dmel_CG2302"
                     /gene_synonym="Acr7E; alpha3; CG2302; Da3; Dalpha3;
                     Dalpha3 nAChR; Dmel\CG2302; D[a3]; lincRNA.965; nAChR;
                     nAchRalpha3; nAcRalpha-7E; nACRalpha-7E; nAcRe; nicra3"
                     /note="pentamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:349866"
     misc_feature    2181..2246
                     /gene="nAChRalpha3"
                     /locus_tag="Dmel_CG2302"
                     /gene_synonym="Acr7E; alpha3; CG2302; Da3; Dalpha3;
                     Dalpha3 nAChR; Dmel\CG2302; D[a3]; lincRNA.965; nAChR;
                     nAchRalpha3; nAcRalpha-7E; nACRalpha-7E; nAcRe; nicra3"
                     /note="TM2 helix [structural motif]; Region: TM2 helix"
                     /db_xref="CDD:349866"
     misc_feature    2277..2345
                     /gene="nAChRalpha3"
                     /locus_tag="Dmel_CG2302"
                     /gene_synonym="Acr7E; alpha3; CG2302; Da3; Dalpha3;
                     Dalpha3 nAChR; Dmel\CG2302; D[a3]; lincRNA.965; nAChR;
                     nAchRalpha3; nAcRalpha-7E; nACRalpha-7E; nAcRe; nicra3"
                     /note="TM3 helix [structural motif]; Region: TM3 helix"
                     /db_xref="CDD:349866"
     misc_feature    <3408..3641
                     /gene="nAChRalpha3"
                     /locus_tag="Dmel_CG2302"
                     /gene_synonym="Acr7E; alpha3; CG2302; Da3; Dalpha3;
                     Dalpha3 nAChR; Dmel\CG2302; D[a3]; lincRNA.965; nAChR;
                     nAchRalpha3; nAcRalpha-7E; nACRalpha-7E; nAcRe; nicra3"
                     /note="Neurotransmitter-gated ion-channel transmembrane
                     region; Region: Neur_chan_memb; pfam02932"
                     /db_xref="CDD:460753"
ORIGIN      
        1 acggcacgcg tttcgcttcg agagagagag agagttaccc gaaaaataac caagcaagca
       61 gcacaaaaaa cgcgctaaag tcgccaattg ttgttgttgt cgtcgaaagt cgaaagtcgg
      121 ttgtcgcttg tctcgttgtt tcccgttgtt tctcgttgat tgtcgttgtt gttgtcgccg
      181 ccgtcgtcgt cggttgttgt cgtattgttg ttgttgctgg ctctctgttt ttttttgcgt
      241 tattttgttg ttgccgtcgt cccgccgcct ccgccttcgc cgccccgccc ccttttcgtc
      301 tgactgtctg cgtgtgagcg tgtgttggtg tgttgtgtct gtgtcgcgca tgtgaccgcc
      361 tcagctgctg aaacttcaaa acaaatattg gaaaattccg aataaaaaaa ggtgtgccag
      421 ttagccgaag gaaccgaatg cagattgaaa gctaaagttc gaggaagcca acaggaacca
      481 aaacaaggaa gcgagcccct gtccgtgcga aggacctcct gggtctgtgt gcgtgtgtgc
      541 gtgtgtgggt gcggcgacac cactaccact accgctatca ctaccactat agcagcatcg
      601 ggcgaaatac tttttgtgcc aaggactcgc cctttgtcta tctataccac tccccttgca
      661 ctcttcgcgg aataacgtgg aacaaatgaa ggaggaagcg caggaatgag gcgatgtgaa
      721 gcaaaaggac aacgaggaca gcaaggaaca caacaaaggc aaaaccggaa gaaggccacc
      781 aaattgaaga acacacacat ttgaagaatt ttaatcgaaa actgccaaga aacaagtata
      841 tttacaaata tatttatata ccttgtaagc caaaaaaaaa aaacaaaaat aagaaaaaaa
      901 cgaccgtaca ttaatagatc taaaatatat agatacatat atagagaaat atgttatatt
      961 tactatgaaa tcgaggagca tggaagcgat acccagaata ataatcgatg taaataaatg
     1021 ctgccaattc gattacactg cgaattaaga actgcaactg agatgcatag aacgcacaac
     1081 aacaatccca gaaataccag gaatccacaa tccatgaaga gaaagttcac ttttcccgcg
     1141 acagctgcgc ctgcgcctta aaaactagac ataaacatat atatatatat atatcgtatc
     1201 gatcttggaa ctattaaatt gaaaggattg gagccgccag agccgaggat tatatatata
     1261 tatatagtca tatatatata tatatatata gagcgagaga gagagacggg gcagatccac
     1321 caccgcagca caggcaaaaa aagcgtgcag agggaaatga gatgaagtgg tttcaagtga
     1381 ccatagatat gattcttgtg ctttcattta tatcaagcag cacagcgaat ccggatgcga
     1441 aacgattgta cgacgatttg ctgagcaact acaacaaact ggtacgaccg gtggtcaatg
     1501 tgacggacgc gctcaccgtt cgcatcaagc tgaagctatc gcaactgatc gatgtcaatc
     1561 tgaagaacca gataatgacc accaatctgt gggtggagca gtcctggtac gactacaagc
     1621 tcaagtggga gcccaaggag tatggcggcg tcgagatgct tcacgtgccc tccgatcaca
     1681 tctggcgtcc ggacatcgtt ctctacaaca acgccgatgg caatttcgag gtgacgctgg
     1741 ccaccaaggc cacgttgaat tacacaggac gcgtcgagtg gcgaccgccg gcgatttaca
     1801 agagctcctg cgaaatcgac gtggagtact ttcccttcga cgagcagacc tgcgtcatga
     1861 agttcggcag ctggacatac gatggatttc aggtggatct gcggcacatc gacgagctga
     1921 acggcaccaa tgtcgtggag gtgggcgtgg atctgtccga gttctatacg tccgtcgaat
     1981 gggatatcct cgaagttcct gcagtgcgaa acgagaagtt ctacacgtgc tgcgatgagc
     2041 catatctgga catcaccttc aacataacga tgcgtcggaa gactctcttc tataccgtca
     2101 acctgatcat tccctgcatg ggcatcagtt ttctcaccat cctcgtattc tacctgccat
     2161 cggatagtgg cgagaaggtc tcattaagca tatccattct gctgtcgctc actgtgttct
     2221 tcctgctgct ggcggaaatc attccgccca catcgctggt ggtgccgctg ctgggaaagt
     2281 ttgtgctctt caccatgata ctggatacct tcagcatctg tgtgactgta ttggtgctga
     2341 acattcactt ccggtcgccg caaacgcaca cgatggctcc ttgggtgcgg accgtgttca
     2401 tcaaccagct gccccgcttc ctggtcatgc gacgtccgct ctatccgatc agcgagatga
     2461 tcaaatcctc gcgccgccta atggtgcgca cctgcaatgg actcgaactg agggatcaaa
     2521 taccaccgct gccaccgccg gtggccttgt ctcgtatgca ccacagcccg aagacgacat
     2581 cgcgtagcac ctcgccgcat ctgcagcacc gcgtgcaaac ctacaacctg atggacgagt
     2641 gcggcatggg catgggcggc ggtgcctcta ccattaccgg ccatttgagc tccctgtatc
     2701 cgccgacgat gtcgacggcc aaccaacaga cctcgaccac atcatcgctg atcgatgccc
     2761 agtaccacaa tcagtaccag cagacgggcg gttcgctgct ggaccatcca cttacgccca
     2821 ccaagttccg ccaaatgact tcgacctcca gccagacggg tcagaatggc agcgggaacg
     2881 gtaacggtaa cggtggctac ggcgggcatg gccagagcgg tggccatcat ctgtatcgac
     2941 agcagtcgag ctgctcggcg aatttctcgc cgctgccgca gcacgcccac caggcgcacg
     3001 cctccaccac caccagcgat ctgggcatgg ccaatccgaa tgtgataaaa tcgacgacga
     3061 cggttaactc ggtggccacc gcctcgacgc tggcggactc ctgctgcagc ggcaccattc
     3121 agatccacca gggcatgggc gccggagccg cttgccagtc gtcggagctg ctgcaccatc
     3181 agcagttgca ccaccagcag atgcatcacc agcagcaaca gcagcagcag cagcagcatc
     3241 accaccacca gcgacccacc acctcggcag cggcggcagc agcagcggca gccgccggcg
     3301 gacccagcac ctcggcagcg gcagctgcag cagcggcggc agcggcggcc ggaacgccac
     3361 ccccaccgcc tccgccggcg ggcgtctgtg atattctgcc cgcctgccag cgcgagggcg
     3421 ggccgcactg ctgttcgggg cgtggcaatg tgcgccaacg gtggcacacc tgtccggaac
     3481 tccacaaggc catggacggg gtcacctaca ttgcggatca gacgcgcaag gaagaggaga
     3541 gcacaagggt gaaagaggac tggaagtacg tggccatggt gctcgatcgc ctgttcctgt
     3601 ggatcttcac aatagccgtg gtcgtcggca ccgctggcat tatcctgcag gctccgacgc
     3661 tctacgacac ccggatgccc atcgatataa agctatcgga gatcgcctcg acgacggcca
     3721 agccgaatgt ggccaggcct gtgttgtaaa cggatcgata attatcggtt cgcgcggatc
     3781 gatcgatatt cagtatttcg aagaaaccac aaaccacaca cacagtctga tggagcaaaa
     3841 cacaagtaat gaatgaaatt cgcatttgtt ttttctttaa ccagagacgg aggatagaaa
     3901 aaaaaaagaa agaaaaaaaa taacaaaaaa aaaataacca caaaacttgt tccagaaaaa
     3961 caaagagaag cgacgacgag aatccaagta actataacta ataaattgta tttgttgtat
     4021 acataaatgg tataactaac tataaataat ttgtacacta atgtttaaac aggcaacgat
     4081 gctaaacaaa aacggttttt tttctaggca acctaaaatg aacagagaga caaaagtgac
     4141 gaaaaagcaa aaaacagaaa acagataaaa tacgaattaa ttaagtaaaa caattcaact
     4201 gaaacgaagc gcaaaatagt atgcaacaga taaacaaata cgatttatgg taataattga
     4261 gagcgaaatt aaattagtga aattaaatta gcctagccaa aacatcaaga ataacggaaa
     4321 caaaaaaaaa acacaaaaca aaacaaaaaa aaatcgtgta tttgttgaac aagaaagtga
     4381 gtagatgaag gacaacatta gttagctaag cgaatcaaca taaaggaaca ggaaaaaagc
     4441 caacaaaaat ggcatatgtg tgtaaaagtg tgtgtgtgtc tgcactgaaa gaaaaacgta
     4501 ggaagagaga acgcgacgtt gtttgccatt tagagccttt gaataccatt taacttgaag
     4561 agattaattc caacttttga atgtagttgc atacatacat acataacaat agctcacaga
     4621 aagttaacag agaacatttt gcctttaaat caagacaaat gcatcttgaa gatagtttcc
     4681 ataaatatta taatgttttt aaagttttct atggaaatct ttggctgatt gtttgcaaat
     4741 ttttatatgt aaaagcgtat ctgttaagga agttatgata aatcaaattt agagacttac
     4801 gacgacgcga agaagccctc ttttttccat tttgaatact tctgctcgat tcattacatt
     4861 ttctccgtgt gcatgagtgt gcgtgctgcc gtgtgtgtgt gtgtgtgtgt gtgcatatgt
     4921 gtgactgcaa atgaggcatg caaattagtg caaataaagc gagagaaagt aagagggaaa
     4981 gagtgtaaga gtgagaaggg ggggtagagt gcgggaaacc ggaaaagccc ccgcaccctc
     5041 aacatcaccc acaccacgct ttcgccttgg ggcaattagt tagcacaaag ctttagttat
     5101 tatgcccaag tgtacgtggg cctgtatgcg tgttggtgcg agcgcatgtg tgtgcatagt
     5161 aaataatcac cattagaaat tcaaattcaa ttttggcgct tgcactgcct aattggcaaa
     5221 agcgcgtcca agttgctagt gattttttat tttttttttt tagttttagt ttttagtttt
     5281 gtttttggcc gcccaattaa catttcccac gctcgccgcg ctcataattt atgctaattt
     5341 ccagttgcat aattcactga aaacgaaagc agcagcaaca aataacacgg caagttaatg
     5401 gccaaataaa aaggcaagtt accttacctt cgcctttgaa ttttttctgg tcttaaatat
     5461 agctattgct atatttgcag tcccgtttat ttgccttaca ctttttttta tggcccataa
     5521 aatcaaatga tgcctgatta gggggagcca acaaaaaagg taacaaacag gacattgata
     5581 gcggggaaat cccctttttt gcattcggaa aacagcaagt tttaaaatct acgcaacata
     5641 acagatttat gttagccaga gggaaatttt aacagcagcc aggcgacaaa agtttcattt
     5701 tcgctattgc cttcttcgaa aagggaaatt tctttattat tctttatatc tatatttccc
     5761 caactagcta ttaatttcaa ttaagaaaat attttgagaa atattagctc ttaaatgggt
     5821 ttatctttaa aaatgcatac attatcttct tttaattatt tttttaaatc attttaaaaa
     5881 ggtgttactg caattgtttt gtgatttttg gtcgccattc aatgattgcc aaagccaaca
     5941 aaaaccacat tgcgtgtgtc gtcacaagca agtgtcaatc acagtcaccg cagtgcaatt
     6001 gtcctgccac gcccccatta ccgcccaccc acacgcacac acaacaaaac acttttccag
     6061 tttttaatta aatgaaatgc aagcgaagag ttatagcaga cactgcgcca gagcgagacg
     6121 gggcgataag tgaaatgcac acaaaatgaa aagccattaa cgaaatatta tatctgaaga
     6181 tggagggagt agcaatgtca gctgcatccg gtttgggata taaaaagcgc acaaatttcg
     6241 gaagtttttc tgcaccaaga gaaacagttg tgcgtgttag ccaaaaagtt taaaaatatt
     6301 tgtactaaat ttcccagttt tgggcaacac agaaatatct tgaaaagcta ttcagtttcg
     6361 aaaatagctg aagcttggtg tttagaggaa tttctagatt ttttcctagt gtctttgatg
     6421 ttatttatgc gcaaggcatt taataggtta cccccgaatt atgactcgcc ccaagtgaag
     6481 aagaagtaat tcggtcatgg agggggaggg cggggggttg cttgttggag accgcaaatc
     6541 ataattgttg cggacacaca agacacaaca aactcaaatg gatggtccag gagttggggt
     6601 ggtggtgtgg tggagtggac tcctccacgt ggtcataaca atgcaatctg tgtggccaca
     6661 cacaaaaagg acattagccc tgctcctttc cacgccagtt tgctttgctt tcagccattg
     6721 gctgttgctg gtgcttgtgg atttgacctt tatactttat actttatact ttgttatgta
     6781 ttttatttta ttgggtcgcc aatgagcgat gagtatgaac actgaaagtg cttaagatac
     6841 tgtgaaatga gctgggacgg cttggaaagc ggttaaccgc ttaaccggtt cataaccgat
     6901 acggattcct gaaaatgctc tataacggat atgccaaagc tgattaaaac atttcagcga
     6961 aagcaattga gccgtatatc tctaaatccc tttcaaccaa ccatacaatg caattttgaa
     7021 ttcaaaaagc tcgtcaacga acaaaaaggg gaaacctatg ctctgccaat tgttggacca
     7081 acaaaatgga atggcaaaaa aaaaaacgaa aaaaaaaggc aaaagcttag ccggaaatat
     7141 ccatcattga acatttccca ctgtaccggc gttttatcta tgggcccgcg tgtttcgcgt
     7201 gtcgcttccc caaacgcaac gggcaataca aaagcaatca taaagttata gcccggtcga
     7261 aacagtcgcc acttcggtcg tgccacactg cctgcaccga ccatactgct gccagttggc
     7321 catttccatt tccatttcca ctaacgtggc cggttttcgg tccagttgct ggcccccaat
     7381 gaactcgaag caaaaaccaa ctttacaccc tagggcgaca ttatccacca ggcagaacat
     7441 ccacccatcc gcccactttc taaaaaacag cgctgatgtg ttgtctttac accacacaaa
     7501 tattgtagtg aattttcagg tgaatttcta cttcaaaagt atttgaattc ataattgatt
     7561 tgaataattt tcgatatttt tttgataggc ttatttattg tctgggtttt aaatcttatt
     7621 atatgctctt ttttttatta aagatcgctg gcatttccgc ttttcctttg cccatttccc
     7681 ccattttacc cacaaccatg tcatttaatg tcctatctat gttactgctt cttttttcgc
     7741 ccaccttttt ggctcaataa gagcgacgaa tttattgctt gctaatagga aaacagcctc
     7801 cctttggact tttccacaag cccccaacat tttccccatt ttcctcggct tttccctcgt
     7861 tttgcgggac gacaaagttt gtccacattt tttgtttgct ttgttggaat gggaatggga
     7921 atgggaatcg ggaatgggaa tcccctggag cagaggaaaa atatgttttc aacataattt
     7981 cattcattat attcgaattg ttattgttgt tggtctgttg gccgatgttg gcgctcattt
     8041 tcagccgacc cattatcggg ccacgccccc ccttcaatct cttctcgcgg agaaagacgc
     8101 aaggtgtggg cgtgtagcat tttggctaat ttgaatttga tttcattcgg aaagtttgcc
     8161 gtttttggca tttgtttcat ggcgctgttt tgattctcgt gcgacaagtg caaatgattg
     8221 tgctcgtgag ttgattaatt gaaaatgaat gcgcgggtag gggtgaaatt gattatcgtt
     8281 ttgcaaccaa tttttggatt ttcttgaaat ttatcgaaat tatctctagc caaaaaaaaa
     8341 acacaaaaag agaaggtcgg aatatggaac aattcatcat cagcttgttt tgccagaccc
     8401 aattaaattc agcgaaatta aaaggatact aaatatttgg cccgaaattc ggcgaaaaca
     8461 tccttagcac aaatgaaatg aacctctaag gtttcacagg aatacaaaaa aaaaaataga
     8521 tgttccacaa atacggattt aaaaagtcct ctcgcggccc aaaaaaaaaa aaaaagaaaa
     8581 tcctttcaaa tgcgtgagtg tgcgtgcgtg tcatatatat cactagtcac taaattaaaa
     8641 aaaataaaca aaaaggaaaa aacaggcgtt gaagaaaacc taattaataa acatatttat
     8701 atggtaattg gagcaagcat acgaaaaccg actcaagcga cagcgaaacc aaagtgtaaa
     8761 aatgttgaaa tattttttac aaatcgaatc gggctaaaaa gctaacaaaa tgcccaaaaa
     8821 tggggctaaa aggggttgca ctttggacat taattgaact cgaccctttg gggtcgctac
     8881 catttgccac aggacattgt gtgctccagc agtttataca taaacgcata gatatatgaa
     8941 tataaatata taaatatata tatataaaga tatttgggat cgggggcatt gtggggccgg
     9001 cgaaactaac actaaaatga taatgaaaaa atcgagcaaa tcgcataaag gagacatttt
     9061 ttttagaacg tacctttaat agaacgatta agaagcgttc acgcagaaca actaacacta
     9121 attttaatgc atacatttaa tggtaaaatt aacataaaac caaaactaac aaatgacatt
     9181 gataagcgat atacacagcg aaaggaaatt agcaaaattg tttaataata agcgaagcaa
     9241 accaaacacg aattgaatta acttttaaga acataacaaa caaaaaaaaa accgaaaaaa
     9301 aaaacgaaca agaaattaag acaagatatt taaacgaagc caagaaaaaa aaactataaa
     9361 attatacgat ttacaaaact aagaacaaca aaaaataatt gtaaaaatag agacaacttt
     9421 tttttgctca aagccagggg gcagatccct caccctcatt cactttccca aaaaaaaaat
     9481 aaatacattt aaacacgaaa ataaaaaata tatttcgcgg cacgtaaaaa tttgttcgtc
     9541 acgaatgtaa accaaccaca aaaaatccaa cacaaaacga ttttctaaac gaaatgtttg
     9601 cagaaattgg ccaacccaaa accaaataat gtttaaaatt aaaccaacat tcaagtaaaa
     9661 ccacaagaag ataagaaaga aaaaacataa gaaattataa ttaaaaccaa aacttagctt
     9721 ctagtgagag aatttttaaa acaaagcaaa aatgaaacga tagaaaatgc cccagaaacc
     9781 aaaatatgaa acaatgttaa caaatcgagg aaggattaat ataaaaatgg aataataaga
     9841 tcggctagcc gacactcaaa tacccttgca atcgattaca aaagtctaga atcatgaaaa
     9901 tggaatacga actcaaatct ttcaaaaaaa aaaaatatcc tctttactgt tactttaatt
     9961 actaagatac tttttactga gtttttttaa attgaagaaa ttttttagtt tacagaccta
    10021 atacgtaaat atgttgtaca attaaacagt tctaaaatcg attccgatta tgaaatgagc
    10081 aaatgagaat tcatgttgag aacgtacgat tgcaaggata tcaaaaacaa agtttcgaag
    10141 gaagaaacgc gaaacctaaa accaaatgag aaaccgaaat ttaactagag aattcttttc
    10201 aaatatcaaa taaagcaaga acattaataa tataatataa tatttcagcc acgatgggag
    10261 agctaagaag tgaataaaac aaacgaatgc aaccaaccca gtaacaacaa caacaacaca
    10321 cacacacatt tcaattgcgc tcgtttagcc catatatagt atatttcaat taaaagaacg
    10381 aaaaaaaaaa caacacatta caatatttca atatgtcatt aagtcacagc gaataaacaa
    10441 caacaataag ttgaaggcga cttacaaatc taaacgagag agaaactgcg atcgtgtgtg
    10501 cgaggg