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LOCUS NM_001298075 2555 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001298075 VERSION NM_001298075.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2555) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2555) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2555) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2555) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2555) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2555) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2555) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2555) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2555) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2555) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2555) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2555) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2555) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2555) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2555) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2555) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2555) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2555) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2555 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2555 /gene="cyr" /locus_tag="Dmel_CG15335" /gene_synonym="CG15335; CG15338; Dmel\CG15335" /note="cypher" /map="7D6-7D14" /db_xref="FLYBASE:FBgn0030001" /db_xref="GeneID:31733" CDS 650..2191 /gene="cyr" /locus_tag="Dmel_CG15335" /gene_synonym="CG15335; CG15338; Dmel\CG15335" /note="CG15335 gene product from transcript CG15335-RC; CG15335-PC; cyr-PC" /codon_start=1 /product="cypher, isoform C" /protein_id="NP_001285004.1" /db_xref="FLYBASE:FBpp0309146" /db_xref="GeneID:31733" /db_xref="FLYBASE:FBgn0030001" /translation="MFSSSASAASTSFNLGQLLPLAIAIGVLHLPQFLCHAAWTTRTP ESFINDTTTTTTTTTTTTTKTMQIQAMQVNCSRELLEMHLELSRPFRGLLYAKDFPLE CRARGKDSTRLHLRIPTSGCGVRAEPLEDGSLEYTVRVMLQKEQKLRQSTDILSSVRC QLPANAMGMPLPVLRQEKGHDRNARMRALAAAAAVPALGATSSINQQQRETPRVRIWL ELGGPNGTGSVEVGVATTLTVRAIVPGNIGVRVVDCAALDGLGESTQQLLDARGCPID EQVMPALHTQHRPAEEGWSKQHEEDLVERTFAATFPAFKFPDRERLHVSCGVQLCKGK CPTLNCRLKTPPPALSAEQHLARIEVFNSLAVTAPQIEVDRLRYDRRHNMSGEDYAPH VRGQVMPGEGTLCLSISKLAISFCVLGLIFLVAVVVAIFSLIRSRRRERRHGAGLSLG LGVGLGIAGTSTSNSSSRLHRDRAEICTSMFSSSSESAQSQPRFGAKFLMPYYPNTLP YGRVY" misc_feature 893..1681 /gene="cyr" /locus_tag="Dmel_CG15335" /gene_synonym="CG15335; CG15338; Dmel\CG15335" /note="Zona pellucida (ZP) domain; Region: ZP; smart00241" /db_xref="CDD:214579" ORIGIN 1 ggtctgcgct cgcgactaac ttggctaact tctggactcg gaattggccc ggtgcattgc 61 atctgcacac tcggtggcgc gcgcttgtct tcttgagact tcttcaatcc aaaacgggcg 121 tgtttcgcga tctcatccac ttgttcaata gcagttagtg ttttgttttt ttttttacgg 181 tgtttactgt ttctgttcgt tgagagcgtg cgaagtgcgc gcatgcgtag tagctgataa 241 ttaaccaatt tgaaaattgc ggttcttctg ctttttttcg caattcaaat tgaccgcata 301 attgcgcaag gaatgtgatt ttttttactg tttataatat aagtgttata gaaaaagaga 361 agaagctcaa cgcgaaatct taaagaatgc taaaattggg atgatgaaag gatattaaat 421 tcgttctaaa agacaagatt ctcgaacttg gactgggagt aggccaatta agagttagcc 481 acgcggccgc acgaacaggt gtcgtcgctt ccaacacagc aacatctagt gacagcagca 541 gcaacatcca aagacagcag caacaagtgg catcattatc gttttgcggt tttgatcatc 601 ggcggggcgg tttgccgttg ccactggtag aaaacgggaa atcggaaaca tgttctcctc 661 cagcgcctcg gccgcgtcca catccttcaa tctcggccag ctgctgccat tggccatcgc 721 catcggagtg ttgcatctgc cgcagtttct gtgtcatgct gcctggacaa ccagaacgcc 781 ggaaagtttc attaacgata cgaccaccac caccaccacc accaccacca ccacaaccaa 841 gaccatgcaa atccaggcga tgcaggtgaa ctgcagccgg gagctgctcg agatgcatct 901 ggagttgagc cgtccctttc gcggattact ctacgccaag gactttccgc tggagtgtcg 961 cgcacgtggc aaggactcga cgcgtctgca tctgcgcatc ccaacatcgg gttgcggagt 1021 gagggcagag ccactggagg acggcagtct ggagtatacg gtgcgtgtga tgctgcaaaa 1081 ggagcagaag ttgcgccaga gcaccgacat ccttagctcg gtgagatgcc aacttccggc 1141 caatgcgatg ggcatgccac ttccggtgtt gcgacaggaa aagggtcacg atagaaatgc 1201 caggatgcga gccttggcag ctgctgctgc agttccagct ctcggcgcca cttcgtccat 1261 caatcaacag cagcgggaga cgccacgcgt taggatctgg ttagaattgg gcggtcccaa 1321 tggcaccgga tccgtggagg tgggcgtcgc caccacgctg acggtgagag ccatcgtgcc 1381 cggaaacatc ggagtgcggg tggtggactg tgcggcactc gatggactgg gcgaatccac 1441 gcagcaatta ctcgatgccc gcggctgtcc catcgacgag caggtaatgc ccgctctgca 1501 cacccagcac cgaccggcgg aggagggttg gtccaagcag cacgaggaag acctggtcga 1561 gcggacgttc gcggccacgt ttcccgcctt caagttcccg gaccgcgagc gcctacacgt 1621 cagctgtggc gtgcaacttt gcaaggggaa gtgtccgact ctaaattgtc gcctaaagac 1681 gcctccgccg gcgttgagcg ccgagcagca tctggcacgc atcgaggttt tcaattcgct 1741 ggccgtgaca gcaccccaaa tcgaggtgga ccgcctgcgc tacgataggc ggcacaacat 1801 gagcggcgag gattatgcgc cgcatgtgag gggtcaagtg atgcccggcg agggaacgct 1861 ctgtctgtcc atctccaagc tggccatctc gttctgcgtt ctgggcctga tctttctggt 1921 ggccgtggtg gtggccatct tttcgctgat tcgatcgcgt cgccgggagc gtcgtcatgg 1981 agctggcttg agtctgggtc tgggagtagg actgggcatc gccgggacga gcacgtcgaa 2041 cagcagcagt cgattgcatc gggatcgggc cgagatttgc acctcgatgt tctcatccag 2101 cagcgaatcg gcgcaatcgc agccgcgttt cggggccaag ttcctgatgc cctactatcc 2161 gaataccctg ccctatggcc gtgtctacta attgattgcg tggcggagtt atttagtgga 2221 ggcgcctccc agagactgac ggaatcgtct aacgagtggt acaccaaaat aaggtctaac 2281 tttagcaata ttatgcgtag ttctgtaact tttcggttgg ttggaaagga tcttgaaagc 2341 gttttgcaag cggtttgggg ccaaaatgcg ttttgatatc ctttcgctgt agctgtatgt 2401 aatatctaca tagatctaag agtaaaaacc taacatagtt gcatccaaat caaacttaag 2461 gaactttgag tctttaaagg tattttttat atattttgtt tacctttttt atttcctgaa 2521 caagttttaa tttggaataa acatacttct aatat