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LOCUS NM_001298063 2961 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001298063 VERSION NM_001298063.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2961) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2961) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2961) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2961) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2961) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2961) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2961) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2961) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2961) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2961) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2961) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2961) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2961) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2961) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2961) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2961) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2961) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2961) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2961) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2961) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2961) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2961) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2961) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2961 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2961 /gene="p115" /locus_tag="Dmel_CG1422" /gene_synonym="CG1422; Dmel\CG1422; dp115; l(1)G0306" /map="7C2-7C2" /db_xref="FLYBASE:FBgn0040087" /db_xref="GeneID:31698" CDS 97..2607 /gene="p115" /locus_tag="Dmel_CG1422" /gene_synonym="CG1422; Dmel\CG1422; dp115; l(1)G0306" /note="CG1422 gene product from transcript CG1422-RB; CG1422-PB; p115-PB" /codon_start=1 /product="p115, isoform B" /protein_id="NP_001284992.1" /db_xref="FLYBASE:FBpp0309148" /db_xref="GeneID:31698" /db_xref="FLYBASE:FBgn0040087" /translation="MEFLKSGIKTVLGSTEPGQQPSAAETVEKLVDRVYSSTLLEDRR DACRALKALSRKYRIEVGAQGMPPLVQVLQNDGQDAEIISYALDTLCNVVTSEEFDEE ADNPTVSVNVGEQFTEMFIKTPEHVTLVMGYLDEYDFRVRRAAIQLITSLISNKTREL QDLILVSPMGVSKLMDLLTDSREVIRNDVLLLLIELTKGNSNIQKIVAFENAFDRLFE IVREEGCSDGGIVVEDCLILLLNLLKNNSSNQQFFKEGSYIQRLSPMFELSQDAEEVG WSPQKVSNFHCLLQVVRALVTPSNQQQVVAACQRVMQKSRLLHALCEILMSSGVPADI LTETINAVAEVVRGDRDNQDELGRVMAPSSPPRPAIVVLLMSMINEKQLLALRCAVLY CFECFLYRNADGQRAVVQTLLPSSASDVSALSTGQLLCTGLFSTDALANWFSAVALMH SLVENVALKEELLRVLLATPGGQKPITLLEQCTNLMQQERYRLQSKVGLLMLLSLWLA HCPGAVKALLETQGTMAYLTAQLCSNEHDEREFLVQGMCAFLMGLCIQFNDNSLPGQK REDISQLIIKRIGQESFCSKLAEVSRHEAYSRACKQAQIRAKSAGELLLDFEYCKLYK GLEALIAKLVSGFDVDGIELTELTLSSEASALVSQYKGIIRGMDAQIQALQQSSKELE QENAELKEKLGEEQSLKAQLLDQNTLLKAQLGASTGQVQSAQGAEATPPNEEELNAAR YQANMYFAENIRLTKELETLRQQLSAEKQSADAAQDSLAAMQKDQEDLLELLADQEAK LTRYEEAGSTNTLPTSNVAPSVPAAGGGSPIPSGTASR" misc_feature 919..1098 /gene="p115" /locus_tag="Dmel_CG1422" /gene_synonym="CG1422; Dmel\CG1422; dp115; l(1)G0306" /note="Armadillo tether-repeat of vescicular transport factor; Region: Arm_vescicular; pfam18770" /db_xref="CDD:465861" misc_feature 1177..1992 /gene="p115" /locus_tag="Dmel_CG1422" /gene_synonym="CG1422; Dmel\CG1422; dp115; l(1)G0306" /note="Uso1 / p115 like vesicle tethering protein, head region; Region: Uso1_p115_head; pfam04869" /db_xref="CDD:461460" misc_feature 2164..2592 /gene="p115" /locus_tag="Dmel_CG1422" /gene_synonym="CG1422; Dmel\CG1422; dp115; l(1)G0306" /note="Uso1 / p115 like vesicle tethering protein, C terminal region; Region: Uso1_p115_C; pfam04871" /db_xref="CDD:461461" ORIGIN 1 ttagccatcg ctaagccgcc cgtcaattgt tttcatgaat tgacgtgtct tgttgaatgc 61 gaaaaaaccc agaatagacc gtaaacacac actcgcatgg agttcctgaa gagtggcatc 121 aaaacggtgc tgggcagcac ggagccgggt cagcagccga gtgccgccga gacggtggag 181 aagctggtgg accgtgtcta ctcctcaacg ctcctggagg atcgacggga tgcctgccga 241 gcgctaaaag ccctgtcccg caagtaccgc atcgaggtgg gcgcacaggg catgcctccg 301 ctggtccagg tgctccagaa cgacggacag gatgcagaga tcatcagcta tgcgctggac 361 acactgtgca acgtggttac tagcgaggag ttcgacgagg aggctgataa tcccaccgtt 421 tcggtgaatg tgggcgagca gttcacggag atgttcatca agacaccgga gcatgtaacc 481 ctggtaatgg gctatctgga cgaatacgat tttcgagtgc gtcgcgctgc catccaactg 541 attacgtccc tcatttcgaa caagacgcgg gagctgcagg atttgattct ggtcagtccg 601 atgggcgttt ccaagctgat ggatctgctg acggacagcc gcgaagtgat tcgcaacgat 661 gtccttctgc tgcttatcga actgaccaag ggcaactcaa acatccaaaa gattgtggcc 721 tttgagaatg cctttgaccg cctttttgaa attgtccgtg aggagggctg ttcggatggc 781 ggaattgttg tggaggattg cctaattctg ctattgaatc ttctcaagaa caactccagt 841 aatcagcagt tctttaagga gggcagctat atccagcgat tgtcgccaat gtttgagctc 901 tcacaggatg cggaagaggt tggctggtcg ccacagaagg tctcaaactt ccattgtctg 961 ctgcaggtgg tgcgggcact ggtcacgccc agtaatcaac agcaggtggt ggccgcctgc 1021 cagcgggtca tgcaaaagtc tcgactgctc catgctcttt gcgagattct gatgagcagt 1081 ggtgtccctg cggatatact cacggaaacc atcaatgcag tggccgaagt ggtgcgcggc 1141 gatcgggaca accaggatga attgggaaga gttatggctc cgagcagtcc acccagacct 1201 gccatcgtgg tccttcttat gtccatgatc aatgagaaac aactgctggc actgcgttgc 1261 gccgtactct actgtttcga gtgctttctt tatcgcaatg ccgatggcca gcgggcggtt 1321 gtacagaccc tgctgccctc cagtgcgtcc gatgtgagtg ccctttcgac gggacaactc 1381 ctttgcaccg gactcttctc cacagatgcg cttgccaact ggttctccgc tgtggcccta 1441 atgcactcac tcgtagagaa tgtcgcccta aaggaggaac tactgcgcgt actgctggcc 1501 actcctggtg gccaaaagcc tatcacgcta ctcgagcagt gcactaatct catgcagcag 1561 gaacgctacc gtttgcaaag caaggtgggt ctgctaatgc tactcagcct gtggctggcg 1621 cattgtccag gtgcggtgaa ggctttgctg gaaacgcagg gcaccatggc ctacctgacc 1681 gctcaacttt gctccaacga gcacgatgaa cgagagttcc ttgtccaggg catgtgcgca 1741 ttcctaatgg gcctgtgcat ccagttcaat gacaactcgc tgccggggca gaagcgcgag 1801 gacatcagtc agctgatcat caagcgaatt ggccaggaga gcttctgtag caaactagca 1861 gaagtgtcgc gacatgaggc ctacagtcgg gcatgcaagc aggcccagat ccgtgccaaa 1921 tccgctgggg aactactgct tgacttcgag tattgcaagc tgtacaaggg actggaggcg 1981 ttgattgcca agctggttag cggatttgat gtagatggca ttgaactgac cgaactcacg 2041 ttgagctcgg aagcttctgc attggtttcc cagtacaagg ggattatccg cggcatggat 2101 gcccagatcc aagcactgca gcaatcctcc aaagaactgg aacaggagaa tgccgagctg 2161 aaggagaaac ttggtgagga gcagtcgctc aaggcgcagc tcttggacca gaacacgctg 2221 cttaaggcac agctgggagc ctcgaccggt caggtgcagt ccgcccaagg tgcggaagcc 2281 acgccgccca acgaggagga gctaaatgcc gctcgctacc aggccaacat gtactttgcc 2341 gaaaacattc gtctaactaa ggagctggag acactacgtc agcagttatc agccgaaaaa 2401 cagagtgcag atgcggcgca agattccctg gcggcgatgc aaaaggatca agaagatttg 2461 ctcgaactgc tggccgatca ggaggcaaag ctaacgcgat acgaagaagc gggctcgact 2521 aatacccttc cgacttccaa tgtagctcca agcgtgccgg cagctggcgg aggaagcccc 2581 atcccaagtg gcaccgccag caggtagaaa tcgtaacgcg gatgagttgc tagccacgta 2641 catgttacaa ctggaaattg ctcgactgcc ctaaaaacgt taaaatatct tatatacaca 2701 cattctactt gttttacatt tatttaactt acgtatagaa tatatgtcta gatcagaatt 2761 taaacgaatc cattattgtt ttggcgggaa ctgcagcaaa tcgcaagaga tagctacata 2821 tatcggctca cgatttcctg tttccatctc tttccgattc cgatttgccc atataatggc 2881 ttatgttgga attcgaagat agtgtttgtt ctgcgtttat ttgtttaaca atattaatat 2941 acctatgatt gggtaaatcg t