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LOCUS NM_001298057 3875 bp mRNA linear INV 26-DEC-2023 transcript variant C (CARPA), mRNA. ACCESSION NM_001298057 VERSION NM_001298057.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3875) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3875) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3875) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3875) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3875) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3875) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3875) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3875) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3875) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3875) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3875) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3875) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3875) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3875) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3875) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3875) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3875) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3875) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3875) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3875) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3875) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3875) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3875) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3875 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3875 /gene="CARPA" /locus_tag="Dmel_CG1402" /gene_synonym="CG1402; Dmel\CG1402" /note="Carbonic anhydrase-related protein A" /map="7C1-7C1" /db_xref="FLYBASE:FBgn0029962" /db_xref="GeneID:31687" CDS 551..1552 /gene="CARPA" /locus_tag="Dmel_CG1402" /gene_synonym="CG1402; Dmel\CG1402" /EC_number="4.2.1.-" /EC_number="4.2.1.1" /note="CG1402 gene product from transcript CG1402-RC; CG1402-PC; CARPA-PC" /codon_start=1 /product="carbonic anhydrase-related protein A, isoform C" /protein_id="NP_001284986.1" /db_xref="FLYBASE:FBpp0310005" /db_xref="GeneID:31687" /db_xref="FLYBASE:FBgn0029962" /translation="MPSPGHHTSFCCSTAGFIACSAIVLLCSSEVLSSWEEWWTYDGI SGPSFWGLINPQWNMCNKGRRQSPIDVVPDKLLFDPYLRPLHIDKHKVSGTLHNTGQS LVFRVDKDTKQHVNISGGPLAYRYQFEEIYIHYGTENVRGSEHFIQGYSFPGEIQIYG FNKELYHNMSEAQHKSQGIVGLSLMVQIGETPNPELRIITSTFNKVLYRGFSTPIRHI SVRSLLPNTDHYITYEGSTTHPGCWESTVWIIVNKPIYITKQELYQLRRLMQGSESTP KAPLGNNARPVQSLHHRTVRTNIDFKRNKNQYACPSMYKDMYYRANRWSPDTGLLIR" misc_feature 686..1450 /gene="CARPA" /locus_tag="Dmel_CG1402" /gene_synonym="CG1402; Dmel\CG1402" /note="Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are...; Region: alpha_CARP_X_XI_like; cd03121" /db_xref="CDD:239395" ORIGIN 1 attcgcattc agagacagac ggacgcgtcc tgtcggccct tcgattgcag ttgtttcgaa 61 aaagcgcgaa aattgaaaat ttccaaaatc ataaaaacgc acgctcttac cgttcaattg 121 gcaaggcaga agaaaagcga taacaatttt tttcgagtgt gcagtgtgaa aagagacggg 181 caaaaaaaaa aaaaatagca aaacgagaaa acagaagacg gaaatgaagc cagcaagttg 241 tgtgcatatc ggagaaagta acggaaatta aaatttgcat atatgcaaaa ggcggcgggc 301 ggcggtgggc gggctattca ggagcgatga agatggaaat taagatgaaa gcgagcccga 361 aactgaccga aacaagactc aagcgtgaga tctaactgca gactcgtgcg caatccaacc 421 caccagccga aggcttaaga ggggcacaca aaaactaaac ccccccagaa ctcccaggag 481 caatagtcca gttccagttt cagctagcgc aatctaaagt ccagccacaa acagatacag 541 tcacatagaa atgccgtcgc caggacacca cacatcattc tgctgctcca cggcaggatt 601 tatcgcttgc tcagcaatcg ttctgctttg cagttccgag gtcctgtcta gttgggaaga 661 gtggtggaca tacgatggca tatccggacc aagcttctgg ggcctcatca atccgcagtg 721 gaatatgtgc aacaaaggac gccgccaatc gcccatcgac gtggtgcccg acaagttgct 781 cttcgatcca tatttgcggc ccctgcacat tgacaagcac aaggtttccg gcactctgca 841 caacacgggc cagtcgctgg tcttccgcgt ggacaaggac accaagcagc acgtgaacat 901 atccggtgga ccgttggcct accgctacca gttcgaggag atctacatac attatggcac 961 ggagaatgtt cgcggatccg agcacttcat ccagggctat agctttcccg gcgagatcca 1021 aatctatgga ttcaacaagg agctgtacca caacatgtcc gaggcgcagc acaagtcgca 1081 gggaatcgtt ggactctcgt tgatggtgca aattggcgag acgcccaatc cggagctacg 1141 gatcatcacg agcaccttca acaaggtgtt gtatagagga ttctccacgc ccatccgaca 1201 catatccgtg aggtcgctgc tgccgaacac ggatcactac atcacctatg agggctccac 1261 gacgcatccg ggctgctggg agagcaccgt ctggatcata gttaataagc ccatctatat 1321 caccaaacag gagttgtacc aactccgacg actgatgcaa ggctccgaga gtacacccaa 1381 agctccacta ggtaataatg cgcgaccagt gcaaagttta caccatagaa ccgtaagaac 1441 gaacatagat tttaagcgaa acaagaatca atatgcgtgc ccctcgatgt acaaggatat 1501 gtactatagg gcgaatcgat ggtcacccga cacgggactt ttgatacgtt gacaactggg 1561 ctacgagtgc cgcgaaaagc aattattatt attgctatta ttattattat tatgtgtggt 1621 aaataatgtt acagcaatta caactataat gacaacaact ggttacaaaa acatcaacaa 1681 ctgaggctgg caacgaagca ttttgcattt tttatgtcgc attcaatttt tatattcatg 1741 tttacaacac gaactcagga ttcgtttggc ttgcaattgc aatattccta cggcagcagc 1801 aacacagcaa attgtattat ttatttcatt attattaata atacgagagc aggacaaatt 1861 taggtaacaa aggcaggata caaaaaaaaa aaaacaaaac aaaaaaaaca cggaaaagga 1921 atgcttatac agcgagtata acaatagagt aaatgccatg ccaaacgcaa atgctaaatt 1981 taacaaacaa aaagctggca caccgacact agcgaaaaat agcaaatagt agctgaaaat 2041 ttccgtaaaa atgttattgc atattcttgt ggcggagtat gagaacttaa ttcaatgaaa 2101 tttaatacaa ttcggttttt gtcttcaatc tatatgtatt tatgcaaagc gcaaaaagca 2161 cgagtctatc atcgtttttt tttttttatg caaagcttaa attttgtaaa tttatgggtg 2221 tgttaattta ataaacaagg actcttgctt ttcaatcatc tatttttgaa tagatgttct 2281 tgtcgaacag aaaatctggt cgatttaaaa gcttagattt aatctgggcg gctcatttaa 2341 atatttccga ttcaatgcat cccatatagg tatacatata aattcataat catttatgat 2401 tcgcctcctc tgttatatgc cgatatacca aaaacaattt agcaaaaaat aaataaaaaa 2461 tgttaagagc aacaaaaaaa aatgcgacta caaagtgaaa taagagaatt tccgtaaact 2521 ggatgggtgg acaataacta acaaacaaaa atgaaacgaa agattaatga agagttagag 2581 acgaaatata aacaaatggc aacagaaatt aacaaaaagt aaatattcat ataaatatac 2641 acaaaaataa aggtatctat ataaattcat atatatacac acatatatac cacactcaac 2701 caggggatct acagaaatcg cacaggattg aaaatttcaa gacatttctt tctttccaaa 2761 taaatgaatc tgatgctttc gaaaacgttt taaaaaaata tgcaaatcgt gctgcgattt 2821 ctgtgacacc tctgtttata tatacaccac tatatatgta cgaacgatcg agacagtgca 2881 gtaactaaaa taaaaccaat acgaactact aagcaatgca gccaggaagt tgaacaaaaa 2941 tcggtacgct atataggttg gctatatata actcccacac ccttaggtac tcaacacaaa 3001 caaccaaagc atctataagc gtctatatac ttggcttcga aatttataat ccggcaggac 3061 atcccatcct cagttagcgg ccatctatat atctataaat ctagtcacca gtcatggagt 3121 atacaactag ctaaactgaa tgggctatat tacgtaattt agctctagaa ggcaagcatt 3181 agaattaact aattaattga ttaactagcc gtgttgctaa caaaagccca agaaaatcaa 3241 attcgaatta atgagtaaac cagaaacgat ctatatatat atatatatat ttaaataaag 3301 taaatgacat ttttttttga agacgaacag tgttgtaaag tgctgtaaag acaagtatta 3361 tggctaatgt agaacctaag ttactgaata gcatttagca attagcacca actgagtttg 3421 tataatatac acgaatatat agtataccta aacatacata tatatatata tatacacaca 3481 catatatata tcagatccgt tcaattccca cattcgcagc tgtcgagcga cactttgtgc 3541 aattatttct ttgggccaac caaccaacca actaactaag gaacatacta aatggccccc 3601 cgattatgtg tagagcatta actatttgta taaaagctat ggggatcgaa acgaattccg 3661 aatttcgaat ttcgaattcc tcaactcggt aacactttgc tacgactgta agttactatt 3721 gtgttgccat atgaaaatgt aactatgtaa ctataaatgc aagaattact aagcatagaa 3781 cgggttagca gcagtgaacg aataaggtat tgtttcccga gaaaacgaaa ttgaagaatg 3841 caaaactaat aaatgaaaag cgaaagtatt atatg