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LOCUS NM_001298054 2557 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_001298054 VERSION NM_001298054.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2557) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2557) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2557) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2557) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2557) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2557) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2557) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2557) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2557) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2557) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2557) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2557) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2557) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2557) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2557) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2557) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2557) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2557) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2557) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2557) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2557) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2557) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2557) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2557 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2557 /gene="rumpel" /locus_tag="Dmel_CG9657" /gene_synonym="cg9657; CG9657; Dmel\CG9657; dSLC5A9" /map="7B2-7B2" /db_xref="FLYBASE:FBgn0029950" /db_xref="GeneID:31674" CDS 132..1937 /gene="rumpel" /locus_tag="Dmel_CG9657" /gene_synonym="cg9657; CG9657; Dmel\CG9657; dSLC5A9" /note="CG9657 gene product from transcript CG9657-RB; CG9657-PB; rumpel-PB" /codon_start=1 /product="rumpel, isoform B" /protein_id="NP_001284983.1" /db_xref="FLYBASE:FBpp0311830" /db_xref="GeneID:31674" /db_xref="FLYBASE:FBgn0029950" /translation="MHVEELRASLQSFGWPDYLVFCLMLAICAVIGIYFCLQLRLESR KQKANGSEEAASSAASYLVGGRQMKIFPITMSLISSFISGITLLGTPTEVYLYGAQYM YIMGSLVLMGFCMYYFFLPVFHELNLISTYKYLEQRYNRSLRLFGSVMFIVASLLWLP IVIYVPAIAFNQATGVNIHIVTPIVCVVCIFYTCIGGLKAVVWTDVIQTLIMFGAMAL VLIKGTLDIGGPGVVWQKAQETARLEVPNFSADLSERYTFYSLVLGGVAHWLKSNAIS QNMIQRYLSLPTLRDARIAIWTFIAGVLAFLMICGYTGLLIYATYSQCDPLETKLAQR NDQLLPLLVMDTLGSYPGLPGVFVAGVFSAALSSLSTGLNSLSAVVLEDFVKTFRKSP LTEGQTAFVMRSVVVVFGIIFVALVFAVEKLGAVLQLTITLSSVANGPLLGIFTAGVM LPWVNSKGALLGGFSSLIVMAWMCVSAQRDLVTGDLVYKRKPYSTMGCNYTFAGEPRE FASLALDGAISSVPSAPFQLYRISYLYFTLFGALVTIVVALVTSLLLRETDLDGVDTR LLTPFVRRWLERRRHRRSKIPDSGQKSSNKQETKT" misc_feature 177..1793 /gene="rumpel" /locus_tag="Dmel_CG9657" /gene_synonym="cg9657; CG9657; Dmel\CG9657; dSLC5A9" /note="Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain; Region: SLC5sbd_NIS-SMVT; cd11492" /db_xref="CDD:271383" misc_feature order(366..368,375..377,1221..1223,1230..1235) /gene="rumpel" /locus_tag="Dmel_CG9657" /gene_synonym="cg9657; CG9657; Dmel\CG9657; dSLC5A9" /note="Na binding site [ion binding]; other site" /db_xref="CDD:271383" ORIGIN 1 cagtcacctc tgatgcgtgc ctccgagcgg tgcgatcgct gcgattctct tagttttttt 61 ctcatttttt tctcgctttc ttttgttttt tttttttttt gttttgagtg aacaagtgaa 121 gtgacgggaa aatgcacgtg gaggagctga gagccagcct gcagagcttt ggatggccgg 181 attatttggt cttttgcctg atgttggcca tttgcgccgt tatcggtata tatttttgcc 241 tgcaactgcg cttagagtcc aggaaacaaa aggccaatgg ctcagaggag gcggcgagta 301 gtgctgcctc gtatttggtt ggtggcaggc agatgaagat ctttcccata accatgtcac 361 tgatatccag ctttatatct ggaattacac ttttgggtac tcccacagag gtttatcttt 421 atggtgctca gtacatgtac attatgggat cgctggtttt aatgggcttc tgcatgtact 481 acttcttctt gccggtcttt cacgaactca atttgatatc cacttataag tatttggaac 541 agcgatataa ccgaagttta aggcttttcg gatctgtcat gtttattgtg gcttcgctac 601 tttggcttcc aattgtgatt tatgtaccgg ctatagcatt caatcaggcc actggagtga 661 acatccatat agtgacgccc attgtgtgtg tggtttgcat tttctatact tgcattggag 721 gtttgaaggc ggtggtttgg acggatgtca tccaaacgtt gatcatgttc ggtgcgatgg 781 ctttggtttt gattaaggga accctggata tcggcggacc tggagttgtg tggcagaagg 841 cccaagaaac agctcgattg gaagtaccca attttagtgc ggatctaagt gagcggtata 901 ccttttattc cctggttttg ggcggtgtag ctcattggct caagtcaaat gcaattagtc 961 agaatatgat ccagagatat ttatcgctac ccacgcttcg tgatgcacgg attgcaatat 1021 ggacatttat cgctggtgtt ttggcctttt tgatgatctg cggatatacg ggtcttttga 1081 tctatgccac ctattctcaa tgtgatcctt tggaaacgaa gttggcccag agaaacgatc 1141 aacttttgcc acttttggta atggacactt tgggctcata tccgggttta ccaggagtat 1201 ttgtagccgg tgtttttagt gcggcattgt cttcgttatc gacagggttg aactctctat 1261 ctgcagtcgt tttggaagat tttgtaaaga cctttagaaa gagtccactg accgagggac 1321 aaaccgcttt tgtgatgcgc agtgtggtcg ttgtatttgg cattatattc gtagctctcg 1381 tatttgccgt ggaaaaatta ggtgccgttc tgcaactgac catcacactt tcgtcggtgg 1441 caaatggacc actcttgggt atatttaccg ccggagttat gttgccatgg gttaattcta 1501 aaggagcttt gctcggagga ttcagttcac ttattgttat ggcctggatg tgtgtaagtg 1561 cccagcggga tctggtcacc ggtgatctcg tctataagag gaaaccatat tcaacgatgg 1621 gctgcaatta tacgtttgcc ggagaaccac gcgagtttgc cagcctggca ttagatggtg 1681 ccatcagttc cgttccaagt gctcccttcc agctgtatcg catatcgtat ctctatttca 1741 cgctttttgg agccctggtg acgattgtag tggcactggt cacaagtctc ctcctccggg 1801 agacggattt ggatggagtt gacacacgtc tgctcacacc atttgtgaga cgctggttag 1861 agcgacgtcg ccatcgccga tcaaagatac cagattctgg tcaaaaatcc agcaacaaac 1921 aggagacgaa aacgtaaagg ggatttgcat ggcggttcaa ggggaaggag tagtagaagg 1981 ctgaccggca tcatcctggc aaagttcctt tcggtagctt agcaaatatt taaaataaaa 2041 cacaattcat aattatttgg gctcctgtgt cctcctgtac gaaatgggtt caaagcagtt 2101 tcctgtgctg ctttctctgt aattagaaaa atgcccgcag ttatggccca ggtttcgaaa 2161 aatgggcaag tgcagaaagg accaggtctg ggtgcatata acctgacccg acaaatcaaa 2221 acgccggctg cccaaataga cggaaaatca caaggaagaa aaaactacgg gtaacaaatt 2281 gctgcttaca aagtcgaaga tttctatact cttatcgatt cgcttaagaa cttgcagaac 2341 ttgatcggaa aatgttcggc atagcaagta tcacaaagtg catacggaca gatagacgga 2401 ctcggctgat caagaatata tacatttttc agggtcgaaa acgctttctt ctacatgttc 2461 taatacatac tcttcaacga atctagtata ccctaatact ctgcgagcga gcggctatta 2521 aaatgaccag aactagagaa cccctgtttc aagtaag