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LOCUS NM_001298041 2393 bp mRNA linear INV 26-DEC-2023 J (CG43736), mRNA. ACCESSION NM_001298041 VERSION NM_001298041.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2393) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2393) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2393) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2393) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2393) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2393) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2393) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2393) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2393) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2393) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2393) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2393) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2393) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2393) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2393) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2393) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2393) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2393) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2393 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2393 /gene="CG43736" /locus_tag="Dmel_CG43736" /old_locus_tag="Dmel_CG33691" /old_locus_tag="Dmel_CG33692" /gene_synonym="CG14433; CG32737; CG32737 ORF A; CG32737-ORFA; CG32737-ORFB; CG33691; CG33692; CG4564; CG4571; Dmel\CG43736" /map="6E1-6E2" /db_xref="FLYBASE:FBgn0263993" /db_xref="GeneID:3771905" CDS 327..2189 /gene="CG43736" /locus_tag="Dmel_CG43736" /old_locus_tag="Dmel_CG33691" /old_locus_tag="Dmel_CG33692" /gene_synonym="CG14433; CG32737; CG32737 ORF A; CG32737-ORFA; CG32737-ORFB; CG33691; CG33692; CG4564; CG4571; Dmel\CG43736" /note="CG43736 gene product from transcript CG43736-RJ; CG43736-PJ" /codon_start=1 /product="uncharacterized protein, isoform J" /protein_id="NP_001284970.1" /db_xref="FLYBASE:FBpp0311820" /db_xref="GeneID:3771905" /db_xref="FLYBASE:FBgn0263993" /translation="MASEDVQITSVIDANGQSLPLHGNSLGGPLGPPVKQERPDDAEI RELAAKMKEQQKQQAAQQASRQAAMQHSNGGAIAASSAGGNMQPPITNGNGQTNIMNY LSRHQKLPNGTMQVVPALASNGRSNGAVSDSGSDKKSSTGPCDEESIQGHFGWAQFGK VSIPYIYRQSEKYCSVRMIELKLLGKYLNCLHPDIYSSCTCVRSYYITDAEARLFIEI NHKHCDGEFGRDIFNQKDLVVRLSDASKFYQFLDICYRKLVSGSKTPSEKCGFIRINK ESVVPYTVRNNQQVVPLFYFEGETENLKTKAELLNGWDLAYLKFCCKVQGIRNELFSS ENVAVISLTDIKSYFPNGTEFEDYWPSKVVDSNLLIGNRANVNNSVNWTRQPSAPPPK VTTSVSGSSGPSSSSGGNMGQNTSAASSSANTAGGQQVTSKSQQQHAASAAAAAATAH QQHLMKQRAAAAAAAAGANGVANAANSFGAAAVAAFNSQAAAAASMLQQSQGNNRMLS QATVQALASSGWMSGQTNLQLHAQMMAQQTHANANRVGSYREHMNNLMMSGSSRQPYS YNNPAISMSSVNNHSGGGGNAPPPLVRSAAGQNANHISRAQRPRQSQYRCLRYV" ORIGIN 1 gcgatagaga agaggtgcag tctaatttct gacgcgttct ttaaaacacc tttttgtgcg 61 gattgacaga tacgatgaaa acttacagca aagcaatgcc agcccataca cacacacacg 121 tgcagaggaa aatgcggcaa aaagaaagtg gagaagagaa gtggagttcg ggaagttacc 181 aagggctgga aaacgcactc ctaatataaa accaaaccaa aagtgtggat atcgaaaagt 241 ctggaaaagt acgataacgc aagattacat agagcgcgag caagacagca ttctagagca 301 aaagagcgag agtgtgcgga ggagcgatgg ccagcgagga tgtgcagatc actagcgtca 361 tcgatgccaa tggccagagc ctaccgctcc acggcaacag tttgggcggt cccctgggac 421 cgcccgtcaa gcaggagcgt cccgatgacg ccgagatccg cgaactagct gccaaaatga 481 aggagcagca gaagcaacag gccgcccagc aggcatcccg tcaagcggcc atgcagcact 541 cgaatggggg cgccattgcg gcatcctcgg ccggtggcaa catgcagccg ccgatcacaa 601 atggcaatgg ccagaccaat atcatgaact acctatctcg tcatcagaaa ctacccaacg 661 gcaccatgca ggtggtgccc gccttggcct ccaatggccg ctcgaatgga gccgtcagcg 721 actccggctc ggacaagaag tcctccacgg gaccctgcga cgaggagtcc attcaaggcc 781 acttcggctg ggctcagttc ggcaaggtat ccataccgta catctatcgc caatcggaga 841 agtactgctc cgtgcgcatg atcgaactga aactgctggg caaatacctt aactgcctgc 901 atccggatat ctactccagc tgcacctgcg tgcgcagcta ctacatcacc gatgcggagg 961 cccgtctctt catcgagatt aatcataagc attgtgacgg cgagttcggt cgcgacatct 1021 tcaaccaaaa ggatttggtg gtgcgtctca gtgacgcatc caagttctat cagttcctgg 1081 atatttgcta taggaaacta gtctccggca gcaagacgcc gtcggagaag tgcggcttta 1141 ttcgcatcaa caaggagtcc gtggtgccct acactgtgcg caacaatcag caggttgtgc 1201 cgctctttta ttttgagggc gagaccgaga atctaaagac caaagcggag ctgctcaatg 1261 gctgggacct ggcttatcta aagttctgct gcaaggtgca gggcatacgc aatgagctct 1321 tctccagcga gaacgtggcc gtgatttcgc tgacggacat caaaagctac ttcccaaatg 1381 gcaccgaatt cgaggactac tggcccagca aggtggttga ctccaatctg ctcattggca 1441 atcgggccaa tgtcaacaac tcggtcaatt ggacccgtca accctcggcg ccgcctccaa 1501 aagtgaccac ctccgtttcc ggatcgtccg gcccttcctc ctccagcggc ggcaacatgg 1561 gccagaacac atcagccgca tcatcctccg cgaacaccgc tggtggccaa caggtgacct 1621 caaaatctca gcaacagcac gctgcctctg ccgccgcagc agcggcgacg gcgcatcaac 1681 agcatctgat gaagcaacgc gccgccgcag cagcagctgc cgccggcgcc aatggtgtgg 1741 cgaatgcggc aaatagtttt ggggcagccg cggtagcggc cttcaattcc caggcggcgg 1801 cagcggcgtc gatgctccag cagtcgcagg gcaacaacag gatgttatcg caggccaccg 1861 tccaggcttt ggccagcagc ggatggatgt ccggacagac aaacctgcag ctccacgccc 1921 agatgatggc gcagcaaacg catgcgaacg ccaatcgcgt gggaagctat cgggagcaca 1981 tgaacaacct gatgatgagc ggcagcagcc ggcagccgta ttcctacaac aaccccgcga 2041 tctccatgtc ctcggtgaac aaccatagtg gtggcggcgg gaatgcccca cctccgctcg 2101 tccgctcggc ggcaggtcaa aatgccaacc acatcagtcg agcgcaaagg ccaaggcaat 2161 cgcaatatcg atgtctccga tatgtttaat cggcaatgca agttgcaagt gtgcggatac 2221 agaagatgat gagaagaaga agagtgaggg tgagagcaag agagagaaag aaacccgcca 2281 acgagaaatc aagaaattca taaaatcatt gaaaatgcat accaaacaaa tgacatttcc 2341 cagtgtcttt agtctttagt tagttgatga gaaatgacaa ttacaacaaa atc