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LOCUS NM_001298030 3743 bp mRNA linear INV 26-DEC-2023 F (CG3168), mRNA. ACCESSION NM_001298030 VERSION NM_001298030.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3743) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3743) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3743) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3743) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3743) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3743) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3743) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3743) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3743) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3743) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3743) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3743) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3743) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3743) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3743) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3743) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3743) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3743) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3743) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3743) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3743) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3743) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3743) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3743 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3743 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /map="6C9-6C10" /db_xref="FLYBASE:FBgn0029896" /db_xref="GeneID:31612" CDS 768..2666 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /note="CG3168 gene product from transcript CG3168-RF; CG3168-PF" /codon_start=1 /product="uncharacterized protein, isoform F" /protein_id="NP_001284959.1" /db_xref="FLYBASE:FBpp0309233" /db_xref="GeneID:31612" /db_xref="FLYBASE:FBgn0029896" /translation="MVEGDSAKGKSEFYNVEAGLQPNYNQSAASNQASNHPTGQANAP ATGNATSHIDNRAIIQPYSLGTGPKQPEYQFAADNRGYEPDSHANGKQQDVERDAPDG GHGGHGPPGKGGKGGKGRKKSVPLPEPTAPIVANFERAIELCGYGKFHYILLAICGLV STSEEMDVISMSFILPSAECDLDLNTETKGWLNSIIFIGMMVGAYFWGSIADSFGRKK VLIVISFMNAFCIVASSFSQTYSFFMLFRFLNGAALGGSGPVIWSYFAEFQPKAKRGS MLSFMAAFWTFGNLFVASLAWLIIPRTIGFTTPYFTYNSWRIFLLVCSLPSFLVGFLL FYLPESPKFLLTRGKKDRALAIFRGIFVTNTKRRPDEYMVYDLEVDEKLLESNGNVKN KYSRMISGMVDHSRALFKSPILRFTIVSITINFTFHIGYYGLLMWFPELFNRFEEYEK AFPDQSAGVCAVTDYVVNLAKEQSNNGTCSSDIPQSVFMESLISLASALPANLLAILG MDMLGRKFFLIAGTMTAGICSALMYFVRSSVQNLVVSAIFSGAISAANAALDCLITEV FPTKLRATGVAISMVAARLGGIIGNIVIAQLLDNYCPSPTFIVSGLLIGGGLMCLLLP NTTRKELN" misc_feature <1176..2645 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /note="synaptic vesicle protein SV2; Region: synapt_SV2; TIGR01299" /db_xref="CDD:130366" ORIGIN 1 gctcagatac tttccaccgc ttgaagtgca cgaacgttga tcgaaatacc gctcacagta 61 ccgccgacgt accgcttaac cgctcgcaaa atcgcattta ccaaagattc gcagagaata 121 gcaacaagaa gtacatcatt acttgtattt ttttatattt ttttctttgc cttaattgta 181 tcgatttcga tgccctttgc cattcgccca ctgtgtgcca gccaacggtt ttaatgtttt 241 cgccagtttg caagaattgc caagcctcgt tgagaactcc gcgcaatacg aacgccaaga 301 tccactataa gcaaaaacac aaacagtcca ctttcagctg acgagcaatt ttctaaaatt 361 taattcacaa acaatacgaa gtataaataa acaaacacca aacaagtgca aaataaaaca 421 gaagtacaga gatatacagg gcgtagccgt gcagtaaaaa caaatattta acggtgcaaa 481 acaaacatat tttattcgaa taaaaagaat acaaccagcc aattgccaaa caaacaataa 541 gacccgaaaa aacagcggtg caaatcaacc caaaagatct cctggccaat aacgagtaca 601 attcaaaaaa taagaaataa cagccaacag accgctaagc gaggcagaca caactgtacc 661 catctaagca gagcttagag caaaaagcca acaaaaaacc ccgacaagta aacccaattt 721 cctttttgct acgcgcacaa gaagccaaca aaaccctgaa ctatagaatg gtagaaggtg 781 attccgcaaa gggcaaaagc gaattctata atgtagaagc tggactacaa ccgaactaca 841 accagagcgc agcaagcaac caagcaagca accatcccac tggccaggcc aacgcaccag 901 ccaccggaaa cgcgacttcg cacatcgaca accgagcgat catccagccg tactccttgg 961 gcaccggacc caagcagccg gagtatcaat ttgcggcgga caatcgcggc tacgagccgg 1021 acagccatgc caatggcaag cagcaggacg tagagcggga cgcccccgat gggggtcacg 1081 ggggtcacgg gccgcccggc aaggggggca agggtggtaa gggacgcaag aagtccgtac 1141 ccttgccgga acccactgcc ccaatagtcg ccaatttcga gagggccatc gaattgtgcg 1201 gctatggcaa gttccattat atactgctgg ccatctgcgg attggtcagc acgtccgagg 1261 aaatggatgt catatccatg tccttcattc tgccatcggc ggagtgtgac ctggatttga 1321 atacggagac caagggctgg ctgaactcga tcatcttcat cggcatgatg gtgggcgctt 1381 acttctgggg cagcatcgcc gatagctttg gccgcaagaa ggtcctcatc gtcatctcgt 1441 tcatgaacgc cttctgcatc gttgcgtcgt ccttctcgca gacatactcg ttcttcatgc 1501 tgttccgctt cctcaatggt gcagctttgg gcggcagtgg tcctgtgatc tggtcgtact 1561 tcgccgaatt ccagcccaag gcgaagcgcg gctccatgct gagcttcatg gccgccttct 1621 ggacgtttgg caatctgttc gtggccagct tggcctggct gatcatcccg cgaacgattg 1681 gcttcaccac gccgtacttc acatacaact cgtggcgtat ctttctgctg gtctgctcac 1741 tgccctcgtt cctcgtggga ttccttctct tctatctgcc cgaatcgccc aagtttctgc 1801 tgacgcgcgg caagaaggat cgcgctctgg ccattttccg tggcattttc gtaacgaaca 1861 cgaaacgccg tccggacgag tacatggtct acgacctgga agtggacgag aagctgctgg 1921 agagcaatgg caatgtgaag aacaaatata gccgcatgat cagcggaatg gttgaccaca 1981 gtcgcgccct gttcaagtcg cccatactgc gtttcactat cgtttcgatt acgatcaact 2041 ttacattcca cattggctac tatggcctgt tgatgtggtt cccggagctc ttcaatcgct 2101 tcgaggagta cgagaaggca ttcccagatc agtcggccgg cgtttgtgct gtcacagact 2161 atgtggtcaa cctggccaag gagcaaagca acaatggtac ctgctcatcg gatataccgc 2221 aatcggtgtt catggaatcg ctgatatcac tagcctcagc gctgccggcc aatctgctgg 2281 ccattctggg catggacatg ctgggcagga agttcttcct aatcgccggt accatgaccg 2341 ccggcatctg ctcggcgttg atgtactttg tgcgcagctc cgttcagaac ctggtcgtat 2401 cggccatttt cagtggtgcc atttcggcgg ccaatgcagc gctcgactgc ctcatcaccg 2461 aagtattccc caccaagctg agagccaccg gcgtggccat ttcaatggtg gccgctcgct 2521 tgggcggcat cattggcaac atcgtgattg cccagctgct ggacaactac tgtccatcgc 2581 ccacgttcat cgtgtcgggt ctgctcatcg gcggcggtct catgtgcctc ctgttgccca 2641 atacgacgcg caaggaactc aattaagcag ctaatcaatt cccaacgata gccaaccagc 2701 caaaaaaaaa acaccccata gaatcttctg ctttaactgc tagtctgcaa ggtcttgttt 2761 cgagtcatga tactatggtt tataatggat catagatatt aacttcaggt caagaccttt 2821 ttgggctaga taagttcccc tttgaacaat caacaatagt taacacaccg cccaaaaaac 2881 cacccgcgac ccacaagtaa tttccatttg ccccattccg ccagaggatc gggcattatc 2941 tgtgtatata tggtatgtgt gtgctacaat acacgattat ttgtatcgtc agtaattatt 3001 taacgatagc gataacgatt ttcattgtgt gtctaatttt aaacgaccct ttaccccctt 3061 tactccccct ttccctaccc actacaaata tctatcaatc tattggaatt taaatgaacc 3121 aacaaaatga aatcagaaat gggcgaaaga aaagtcacaa cgagaacaaa ccttatcaca 3181 aggaaaataa gaaaatttgg aaactaatac atacaaccat tttggaatgc ggattggcat 3241 tctttcgccc aattatgata agcaaagaaa accccaagcc agcgagaaga tatagcaggt 3301 aggatcgata gcaatcgatg tatatgtatt gtattgtacg atatgtagag aataatatat 3361 atatatttgg caagcgccgg cgccggctga agcagcagca gagggactga gtaacggtaa 3421 cggtaaagat aaggggctaa gcgccggata atcaaatgga atcaaagata ctatcgcacc 3481 gttctcgttc cgctgctgtc cgttattgtt gttattattg ctattattat taatgcattc 3541 aatgtaaaac acatacgtat ataactttat ctatatatta aacatacata ctatatcaaa 3601 aagatatttt ttttttgttt ttttttcgtc atgtaggacc aaagcacagg aagtgaaaga 3661 atatttttaa aatttagtta cgttataaca agttacgcta catatataca aaacaaaaac 3721 cctaataaaa aaggacaaac cac