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LOCUS NM_001298029 3375 bp mRNA linear INV 26-DEC-2023 E (CG3168), mRNA. ACCESSION NM_001298029 VERSION NM_001298029.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3375) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3375) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3375) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3375) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3375) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3375) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3375) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3375) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3375) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3375) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3375) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3375) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3375) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3375) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3375) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3375) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3375) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3375) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3375) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3375) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3375) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3375) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3375) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3375 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3375 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /map="6C9-6C10" /db_xref="FLYBASE:FBgn0029896" /db_xref="GeneID:31612" CDS 400..2298 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /note="CG3168 gene product from transcript CG3168-RE; CG3168-PE" /codon_start=1 /product="uncharacterized protein, isoform E" /protein_id="NP_001284958.1" /db_xref="FLYBASE:FBpp0309232" /db_xref="GeneID:31612" /db_xref="FLYBASE:FBgn0029896" /translation="MVEGDSAKGKSEFYNVEAGLQPNYNQSAASNQASNHPTGQANAP ATGNATSHIDNRAIIQPYSLGTGPKQPEYQFAADNRGYEPDSHANGKQQDVERDAPDG GHGGHGPPGKGGKGGKGRKKSVPLPEPTAPIVANFERAIELCGYGKFHYILLAICGLV STSEEMDVISMSFILPSAECDLDLNTETKGWLNSIIFIGMMVGAYFWGSIADSFGRKK VLIVISFMNAFCIVASSFSQTYSFFMLFRFLNGAALGGSGPVIWSYFAEFQPKAKRGS MLSFMAAFWTFGNLFVASLAWLIIPRTIGFTTPYFTYNSWRIFLLVCSLPSFLVGFLL FYLPESPKFLLTRGKKDRALAIFRGIFVTNTKRRPDEYMVYDLEVDEKLLESNGNVKN KYSRMISGMVDHSRALFKSPILRFTIVSITINFTFHIGYYGLLMWFPELFNRFEEYEK AFPDQSAGVCAVTDYVVNLAKEQSNNGTCSSDIPQSVFMESLISLASALPANLLAILG MDMLGRKFFLIAGTMTAGICSALMYFVRSSVQNLVVSAIFSGAISAANAALDCLITEV FPTKLRATGVAISMVAARLGGIIGNIVIAQLLDNYCPSPTFIVSGLLIGGGLMCLLLP NTTRKELN" misc_feature <808..2277 /gene="CG3168" /locus_tag="Dmel_CG3168" /gene_synonym="BEST:LP06294; Dmel\CG3168; LP06294.5prime; Slc22a18" /note="synaptic vesicle protein SV2; Region: synapt_SV2; TIGR01299" /db_xref="CDD:130366" ORIGIN 1 gaacgcattg tccaatcgct cttggagccg cgtggagctc ctccaaccag tgatcgtgat 61 ctatatagcc cggattcttc aattcgtcta ctaaccgccg tgcatcggat ctcttttcga 121 aaccacacac acacacacag caattagtcg acatcgtcga caaggacagc agtagtaggt 181 agatcacgtg ccacttacga tttgaggatt tcttataagc atcgtaaaaa taatctctgc 241 accttatagt tcattttgga gaaccgctaa gcgaggcaga cacaactgta cccatctaag 301 cagagcttag agcaaaaagc caacaaaaaa ccccgacaag taaacccaat ttcctttttg 361 ctacgcgcac aagaagccaa caaaaccctg aactatagaa tggtagaagg tgattccgca 421 aagggcaaaa gcgaattcta taatgtagaa gctggactac aaccgaacta caaccagagc 481 gcagcaagca accaagcaag caaccatccc actggccagg ccaacgcacc agccaccgga 541 aacgcgactt cgcacatcga caaccgagcg atcatccagc cgtactcctt gggcaccgga 601 cccaagcagc cggagtatca atttgcggcg gacaatcgcg gctacgagcc ggacagccat 661 gccaatggca agcagcagga cgtagagcgg gacgcccccg atgggggtca cgggggtcac 721 gggccgcccg gcaagggggg caagggtggt aagggacgca agaagtccgt acccttgccg 781 gaacccactg ccccaatagt cgccaatttc gagagggcca tcgaattgtg cggctatggc 841 aagttccatt atatactgct ggccatctgc ggattggtca gcacgtccga ggaaatggat 901 gtcatatcca tgtccttcat tctgccatcg gcggagtgtg acctggattt gaatacggag 961 accaagggct ggctgaactc gatcatcttc atcggcatga tggtgggcgc ttacttctgg 1021 ggcagcatcg ccgatagctt tggccgcaag aaggtcctca tcgtcatctc gttcatgaac 1081 gccttctgca tcgttgcgtc gtccttctcg cagacatact cgttcttcat gctgttccgc 1141 ttcctcaatg gtgcagcttt gggcggcagt ggtcctgtga tctggtcgta cttcgccgaa 1201 ttccagccca aggcgaagcg cggctccatg ctgagcttca tggccgcctt ctggacgttt 1261 ggcaatctgt tcgtggccag cttggcctgg ctgatcatcc cgcgaacgat tggcttcacc 1321 acgccgtact tcacatacaa ctcgtggcgt atctttctgc tggtctgctc actgccctcg 1381 ttcctcgtgg gattccttct cttctatctg cccgaatcgc ccaagtttct gctgacgcgc 1441 ggcaagaagg atcgcgctct ggccattttc cgtggcattt tcgtaacgaa cacgaaacgc 1501 cgtccggacg agtacatggt ctacgacctg gaagtggacg agaagctgct ggagagcaat 1561 ggcaatgtga agaacaaata tagccgcatg atcagcggaa tggttgacca cagtcgcgcc 1621 ctgttcaagt cgcccatact gcgtttcact atcgtttcga ttacgatcaa ctttacattc 1681 cacattggct actatggcct gttgatgtgg ttcccggagc tcttcaatcg cttcgaggag 1741 tacgagaagg cattcccaga tcagtcggcc ggcgtttgtg ctgtcacaga ctatgtggtc 1801 aacctggcca aggagcaaag caacaatggt acctgctcat cggatatacc gcaatcggtg 1861 ttcatggaat cgctgatatc actagcctca gcgctgccgg ccaatctgct ggccattctg 1921 ggcatggaca tgctgggcag gaagttcttc ctaatcgccg gtaccatgac cgccggcatc 1981 tgctcggcgt tgatgtactt tgtgcgcagc tccgttcaga acctggtcgt atcggccatt 2041 ttcagtggtg ccatttcggc ggccaatgca gcgctcgact gcctcatcac cgaagtattc 2101 cccaccaagc tgagagccac cggcgtggcc atttcaatgg tggccgctcg cttgggcggc 2161 atcattggca acatcgtgat tgcccagctg ctggacaact actgtccatc gcccacgttc 2221 atcgtgtcgg gtctgctcat cggcggcggt ctcatgtgcc tcctgttgcc caatacgacg 2281 cgcaaggaac tcaattaagc agctaatcaa ttcccaacga tagccaacca gccaaaaaaa 2341 aaacacccca tagaatcttc tgctttaact gctagtctgc aaggtcttgt ttcgagtcat 2401 gatactatgg tttataatgg atcatagata ttaacttcag gtcaagacct ttttgggcta 2461 gataagttcc cctttgaaca atcaacaata gttaacacac cgcccaaaaa accacccgcg 2521 acccacaagt aatttccatt tgccccattc cgccagagga tcgggcatta tctgtgtata 2581 tatggtatgt gtgtgctaca atacacgatt atttgtatcg tcagtaatta tttaacgata 2641 gcgataacga ttttcattgt gtgtctaatt ttaaacgacc ctttaccccc tttactcccc 2701 ctttccctac ccactacaaa tatctatcaa tctattggaa tttaaatgaa ccaacaaaat 2761 gaaatcagaa atgggcgaaa gaaaagtcac aacgagaaca aaccttatca caaggaaaat 2821 aagaaaattt ggaaactaat acatacaacc attttggaat gcggattggc attctttcgc 2881 ccaattatga taagcaaaga aaaccccaag ccagcgagaa gatatagcag gtaggatcga 2941 tagcaatcga tgtatatgta ttgtattgta cgatatgtag agaataatat atatatattt 3001 ggcaagcgcc ggcgccggct gaagcagcag cagagggact gagtaacggt aacggtaaag 3061 ataaggggct aagcgccgga taatcaaatg gaatcaaaga tactatcgca ccgttctcgt 3121 tccgctgctg tccgttattg ttgttattat tgctattatt attaatgcat tcaatgtaaa 3181 acacatacgt atataacttt atctatatat taaacataca tactatatca aaaagatatt 3241 ttttttttgt ttttttttcg tcatgtagga ccaaagcaca ggaagtgaaa gaatattttt 3301 aaaatttagt tacgttataa caagttacgc tacatatata caaaacaaaa accctaataa 3361 aaaaggacaa accac