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LOCUS NM_001298023 2411 bp mRNA linear INV 26-DEC-2023 transcript variant I, mRNA. ACCESSION NM_001298023 VERSION NM_001298023.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2411) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2411) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2411) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2411) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2411) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2411) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2411) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2411) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2411) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2411) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2411) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2411) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2411) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2411) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2411) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2411) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2411) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2411) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2411) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2411) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2411) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2411) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2411) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2411 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2411 /gene="Pink1" /locus_tag="Dmel_CG4523" /gene_synonym="BEST:GH23468; CG4523; Dmel\CG4523; dpink; dPink1; dPINk1; dPINK1; Pink; PINK-1; pink1; PINK1" /note="PTEN-induced putative kinase 1" /map="6C6-6C6" /db_xref="FLYBASE:FBgn0029891" /db_xref="GeneID:31607" CDS 141..2306 /gene="Pink1" /locus_tag="Dmel_CG4523" /gene_synonym="BEST:GH23468; CG4523; Dmel\CG4523; dpink; dPink1; dPINk1; dPINK1; Pink; PINK-1; pink1; PINK1" /EC_number="2.7.11.1" /note="CG4523 gene product from transcript CG4523-RI; CG4523-PI; Pink1-PI; PTEN induced putative kinase 1; PINK1; phosphatase and tensin homolog-induced putative kinase 1; PTEN-induced kinase 1; pink; PTEN-induced putative kinase 1; Pten-induced kinase 1(PINK1); ortholog of PINK1" /codon_start=1 /product="PTEN-induced putative kinase 1, isoform I" /protein_id="NP_001284952.1" /db_xref="FLYBASE:FBpp0311462" /db_xref="GeneID:31607" /db_xref="FLYBASE:FBgn0029891" /translation="MSVRLLTVRLIKHGRYILRSYCKRDIHANILDQNQLKTRSKRGF PLPSTAANVLRTTPQQAAKSVVNVVPRTINSPSGSPFNGSGSSPTSSSGIFRVGQHAR KLFIDNILSRVTTTYSEDLRQRATRKLFFGDSAPFFALIGVSLASGSGVLSKEDELEG VCWEIREAASRLQNAWNHDEISDTLDSKFTIDDLEIGPPIAKGCAAVVYAADFKKDVA SDGASLHTDAQPQATPAFAPNSWSTHEMMSPLQNMSRFVHNFGGSVDNVFHYSQPSAA SDFVGAQSREQDQRHHEQQQHQNQEQEQHQNQEPSSSAFNVTSPANSNINSSVDSYPL ALKMMFNYDIQSNALSILRAMYKETVPARQRGMNEAADEWERLLQNQTVHLPRHPNIV CMFGFFCDEVRNFPDGHLLYPVAQPQRINPQGYGRNMSLYLLMKRYDHSLRGLLDSQD LSTRNRILLLAQMLEAVNHLSRHGVAHRDLKSDNVLIELQDDAAPVLVLSDFGCCLAD KVHGLRLPYVSHDVDKGGNAALMAPEIFNTMPGPFAVLNYGKADLWACGALAYEIFGN RNPFYSSSGGMARERGEMTLSLRNSDYRQDQLPPMSDACPPLLQQLVYNILNPNPSKR VSPDIAANVVQLFLWAPSNWLKAGGMPNSPEILQWLLSLTTKIMCEGRPQMGAGLMPV ASCGNRRAYVEYLLICSFLARARLRRIRGALNWIQNVVA" misc_feature 1122..2057 /gene="Pink1" /locus_tag="Dmel_CG4523" /gene_synonym="BEST:GH23468; CG4523; Dmel\CG4523; dpink; dPink1; dPINk1; dPINK1; Pink; PINK-1; pink1; PINK1" /note="Catalytic domain of the Serine/Threonine protein kinase, Pten INduced Kinase 1; Region: STKc_PINK1; cd14018" /db_xref="CDD:270920" misc_feature order(1461..1463,1467..1469,1575..1577,1581..1583, 1587..1589,1650..1652,1716..1727) /gene="Pink1" /locus_tag="Dmel_CG4523" /gene_synonym="BEST:GH23468; CG4523; Dmel\CG4523; dpink; dPink1; dPINk1; dPINK1; Pink; PINK-1; pink1; PINK1" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270920" misc_feature order(1638..1667,1674..1727) /gene="Pink1" /locus_tag="Dmel_CG4523" /gene_synonym="BEST:GH23468; CG4523; Dmel\CG4523; dpink; dPink1; dPINk1; dPINK1; Pink; PINK-1; pink1; PINK1" /note="activation loop (A-loop); other site" /db_xref="CDD:270920" ORIGIN 1 gctgtttggt tataaatcgg cgctatcgat cgcacacatg agcaaaattg gcggagaaga 61 agaggaagca gcagcaagag ttaagcacca caaatcttaa agaataggca ctaggagccg 121 aggtctttgc gggccgaaag atgtctgtga gactgctgac cgtgcgactg atcaaacatg 181 gtcgctacat tttgcgcagc tattgtaaac gtgatataca cgccaacatt ttggaccaga 241 atcaattgaa gacaagaagc aagcgaggct ttcccctacc ctccaccgct gccaatgtgc 301 tgcggacaac gccccagcag gcggccaaat cggtggtcaa tgtagtgccc cgcaccatca 361 actccccgtc gggatcaccg tttaatggca gcggcagtag ccccaccagc agcagtggaa 421 tcttccgagt gggccagcat gcgcgcaaat tgttcatcga caacatcctc agccgggtga 481 ccaccaccta ctcggaggat ctgcgccagc gcgctacccg caagctattc tttggcgatt 541 cagcgccctt cttcgccctg attggcgtta gtctggcctc cggatcgggt gtgctcagca 601 aggaggatga actggagggc gtgtgctggg agattcggga ggcagctagc cggctgcaga 661 acgcctggaa tcacgacgag atctccgata cgctagacag caagttcacc atcgatgact 721 tggaaatcgg tccgcccata gccaaaggtt gtgccgctgt cgtctatgca gcggatttca 781 agaaagatgt tgcctcggat ggtgcatccc tgcataccga tgcgcagccg caggcaacgc 841 cagcctttgc gccgaatagc tggagtaccc acgagatgat gtcgccgctg cagaacatgt 901 cgcgctttgt tcacaacttt ggcggctctg tggacaacgt cttccactac agccagccat 961 ctgcggccag tgatttcgtg ggcgcccagt cgagggaaca ggaccagcgg caccacgagc 1021 aacagcagca tcagaatcag gaacaagagc agcatcagaa ccaggagccc agcagcagtg 1081 ccttcaatgt gacttctcca gcgaattcaa acatcaacag ctctgtggac agttatccac 1141 tggcactcaa aatgatgttc aactacgaca tccagagcaa cgctctgtcc atactgcgtg 1201 ccatgtacaa ggagacggta ccggcacgcc agcgcggcat gaatgaggcc gccgatgagt 1261 gggaacgttt gctgcagaat caaactgttc acctgccgcg gcatccgaac attgtctgta 1321 tgtttggctt cttttgcgac gaggtgcgca actttcccga tggccatctc ctgtatccgg 1381 tggcgcagcc gcaacgcatc aatccacagg gctatggccg caatatgtcg ctgtatctgc 1441 tgatgaaacg ctacgatcac agtcttcgcg gcctgctcga tagccaggat ctgagcacgc 1501 gcaatcgcat cctgctgctg gctcaaatgc tcgaggctgt caaccatttg agccgtcacg 1561 gcgttgccca tcgtgaccta aagtctgata atgtgctaat cgagctgcag gacgatgcgg 1621 cgccggtgct agtgctctcc gactttggct gttgtctggc ggacaaggtg catggcctgc 1681 gcctgccgta cgtttcgcac gacgtcgaca agggcggcaa tgcggcgttg atggcgccag 1741 agatcttcaa tacgatgccc ggtccgtttg ccgtactcaa ttatggcaag gccgatctgt 1801 gggcttgcgg tgccctggct tacgaaatct ttggcaaccg caatccgttc tattcgagca 1861 gcggtgggat ggcgcgcgaa cgcggtgaga tgacgctttc gctgaggaac agcgattacc 1921 gacaggacca attgccgcca atgagcgatg cttgcccgcc gctgctgcaa cagctggtct 1981 acaacatcct caatcccaac ccgtccaagc gggtcagtcc ggatattgcg gcaaatgtgg 2041 tgcagctgtt cctctgggcc ccatccaatt ggcttaaggc gggcggcatg cccaacagtc 2101 cggagatcct acagtggctc ctttcgctga ccactaagat tatgtgcgag ggtcgtccac 2161 agatgggcgc cggattgatg ccagtggcca gctgtggcaa taggcgcgcc tatgtggagt 2221 acctgctcat atgcagcttt ctggcacgcg cccggctgcg tcgcattcgc ggcgccctca 2281 actggatcca gaatgtggtg gcgtaggaga aaagccttct acttgttact ctgagaaaat 2341 caaatggaaa agcgtgtgat acctatattt tacatatgta tttataaatg aaatcaaaat 2401 taacgccaaa a