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LOCUS NM_001297988 3129 bp mRNA linear INV 26-DEC-2023 B (CG3726), mRNA. ACCESSION NM_001297988 VERSION NM_001297988.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3129) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3129) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3129) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3129) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3129) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3129) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3129) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3129) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3129) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3129) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3129) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3129) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3129) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3129) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3129) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3129) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3129) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3129) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3129) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3129) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3129) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3129) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3129) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3129 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3129 /gene="CG3726" /locus_tag="Dmel_CG3726" /gene_synonym="Dmel\CG3726" /map="5C7-5C10" /db_xref="FLYBASE:FBgn0029824" /db_xref="GeneID:31525" CDS 633..2681 /gene="CG3726" /locus_tag="Dmel_CG3726" /gene_synonym="Dmel\CG3726" /note="CG3726 gene product from transcript CG3726-RB; CG3726-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_001284917.1" /db_xref="FLYBASE:FBpp0309797" /db_xref="GeneID:31525" /db_xref="FLYBASE:FBgn0029824" /translation="MLPQQYCLRWKYHHSNLQTMFSQLLDRGCFCDVTLACEGQLIRA HRVVLCACSTFFDAVLSNYASERDPIIIMKDVTFAEVKCLIEFMYKGEINVEHSSLPS LLKTADDLKIKGLAEVTWRDDEDGPPPPMAAAEFHSPPRSLAESYAQDLILQHQQQQQ QGPAAPPLNLHSSAALLERDRERERERDRERLSPGMEGVLGRMPVMTPLTGASGSAGV GSVSGGTSLEGVAPVEHFLGPKRKRGRPPLDDAYDVFNVRKLAQYAANLEPAQRAYLE TARHFTEEPPLAAHAASMASPPAACPPKQRQRLRHQQQQQQQLLQSESSDQEQPAAGQ DWSNLEPNGSATPKLLSDGDANKQETEGGDESLPAVLTTASSSGTKKLEKIGERRERH GKLRHARRLYEKSGEDEVDPPKEEPDELPQPVEEIENEHLVANRAESPRPTVVIPASF ACKYEGGVTAAGGGSGSGTGSGSLGSSYLINEHGMLMAHEFAPNVASAAATAAVAVAA AAAAVANASAGNGNGGQDVSGSGTGAAADYPDIKLEDYDAAELRLTNEELSQWQDVIK MDDYLAKGRRPQFWEEPFTKRVLDAIKNKRLEMKKAARILGVSYGTLYGRYREVYGCL KHPYSGTAFRNSGSTSTSQMGVQPRFDLGFRNGGVLPAQLELGKLKKDLSELWTRPQI " misc_feature 720..974 /gene="CG3726" /locus_tag="Dmel_CG3726" /gene_synonym="Dmel\CG3726" /note="BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins; Region: BTB_POZ_BAB-like; cd18315" /db_xref="CDD:349624" misc_feature 2391..2498 /gene="CG3726" /locus_tag="Dmel_CG3726" /gene_synonym="Dmel\CG3726" /note="helix-turn-helix, Psq domain; Region: HTH_psq; pfam05225" /db_xref="CDD:283007" ORIGIN 1 tctctctcca gcaacattgc tgccagccaa agtctatata agcaacaacg aaagttcaat 61 tcttttcact caaaaatccg tctcctccgc ggtacgtttc acttcgctgc gccgctaaaa 121 gaaaattcct ggaaaatatt aacaaacaca tgagcctaac attcttaaca attccaaaac 181 agaacattta tttttggtga atttcctgac aatttagtgg ttagtgttta atgttaaaac 241 attgctgtgc gcatttaccg ttatccgctc gcaaggcaaa agaaaaagcg cgcgttttga 301 attcgctgtt tcgcattatt tttttttatg ttaaaaaaca aaatatagaa atgaaacaaa 361 aatggcaagc cagaaattaa atgaatgaat gaattttttt cgacacaatt ctgctgcgtg 421 tgcaattcga ttcgaataac aaaacaaaaa gcataaagga aaagtaaaag aaattcgagg 481 ggggaaaaaa acgccaaaag aaaagatagc gcgaaaagtc ataaagaaaa gactggcaac 541 tgtccaagga gtagcttgtt ggtggaatta ctagaaccgg ctgctccacc agagacacca 601 ccatcagggg cagcagcagg cgcggcacca ccatgctgcc gcagcagtac tgcctaaggt 661 ggaagtacca ccatagcaat ctgcagacca tgttctccca gctgctggat cgcggttgct 721 tctgcgacgt gaccctggcc tgcgagggtc agctcatccg cgcccatcgc gtcgtcctgt 781 gcgcctgcag caccttcttc gacgccgtgc tctccaacta cgccagtgaa cgtgatccga 841 tcatcatcat gaaggacgtt acctttgcgg aggtcaaatg cctcatcgag ttcatgtaca 901 agggcgagat caacgtggag cattccagcc ttccctcgct gctgaagacc gccgatgacc 961 tgaagatcaa gggcctggcc gaggtgacct ggcgcgatga cgaagacgga ccgccgccac 1021 caatggccgc cgccgagttt cactcaccgc cgcgcagctt ggcagagagt tacgcccagg 1081 acctaatcct tcagcatcag caacagcaac agcagggccc agctgctcca cccttgaatt 1141 tgcacagctc tgctgcgctc ttggagagag atcgagaacg ggaaagggaa cgtgaccggg 1201 agcgtctctc gccggggatg gagggtgtac tgggtcgcat gcccgtgatg acgccgctga 1261 ctggcgcatc gggttcggca ggagtgggtt cggtatccgg tggcacatcg ctcgagggcg 1321 tcgctcccgt ggagcacttt ctgggtccca aacgcaagcg tggtcgtccg ccgctagacg 1381 atgcctatga tgttttcaat gtacgcaagc tggcccagta tgccgccaat ctggagcccg 1441 cccagcgtgc ctacttggag acggcgcgtc actttacgga ggagccgcca ctggccgccc 1501 atgccgcctc gatggcctcc ccacccgccg cctgcccgcc gaaacagcgc cagcgtctac 1561 gtcaccagca gcagcagcag caacagctgc tacagtcgga gagcagtgac caggagcagc 1621 cggctgctgg ccaggattgg tccaatttgg agccaaatgg cagtgccacg cccaaactgc 1681 tcagcgatgg cgatgctaac aagcaggaaa cggagggcgg tgatgaatcg ctaccggcag 1741 tgctaaccac cgccagcagc agcggcacca aaaagctgga aaagataggc gagcgtcgcg 1801 aacgccatgg caaattacgt catgctcgtc gcctttatga gaagtctgga gaggatgagg 1861 ttgatccgcc caaggaggag cccgatgagc tgccgcaacc ggtggaagag atcgagaacg 1921 agcatctggt ggcaaatagg gcagagtcgc cgcgtcctac ggtcgtcata ccagctagtt 1981 ttgcctgcaa atacgaggga ggcgtgactg ccgcaggcgg tggctccggt tctggaactg 2041 gatccggatc gcttggatcc tcctacttga tcaacgaaca tggcatgctg atggcccacg 2101 aatttgcacc gaatgtggcc agtgccgccg ccaccgcagc tgtggccgtt gcagcagccg 2161 ccgctgcagt ggcaaatgcc tcagccggaa acggaaacgg tggtcaggat gtaagtggca 2221 gtggaaccgg tgccgccgcc gactatcccg acatcaagct ggaggactac gatgccgccg 2281 aactgcgact gaccaacgag gagctgtcgc agtggcagga cgtcatcaag atggacgact 2341 acctggctaa ggggcggcgt ccacagttct gggaagagcc attcaccaag cgcgtgttgg 2401 acgccattaa aaacaaaaga ctcgagatga agaaggccgc cagaattctg ggcgtctcct 2461 atggcactct gtatgggcgt taccgcgagg tctatggctg ccttaagcat ccttacagtg 2521 gcaccgcctt ccggaactct ggatccacct cgaccagtca gatgggagtt cagcctcgct 2581 tcgacttggg attccgcaac gggggcgtcc ttccagctca gctggagctg ggcaagctga 2641 agaaggatct gagcgagcta tggacacgtc cgcagatttg aggaccaacc aatgccacaa 2701 ccataacgaa actgcagaaa agcctcaaac gtcgccacag gctgatctag gattacaaca 2761 gaaggatgaa agacagctag acgaggctag ttttggatcc tgagtaatgc tttcctgaat 2821 cctgaattcc cacattaatg tgttgttccc atcggtgggt cacaactata actgatctac 2881 acatttagga tcttattatt acataatata taatataata taaatacatg tctataaata 2941 caaccacgtg gattagttaa ttgaaatacg cacggacacg tgtggtttta gtggtaaata 3001 catttctctt ggtagtgaaa ttcaacacca taaactatgg aatctagtta atcgataaaa 3061 taacacggaa gtgaagtgaa ttttttgata agctaacgaa aaggaacaca aacaatatgt 3121 attacatac