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LOCUS NM_001297984 2442 bp mRNA linear INV 26-DEC-2023 B (CG16721), mRNA. ACCESSION NM_001297984 VERSION NM_001297984.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2442) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2442) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2442) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2442) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2442) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2442) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2442) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2442) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2442) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2442) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2442) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2442) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2442) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2442) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2442) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2442) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2442) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2442) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2442) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2442) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2442) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2442) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2442) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2442 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2442 /gene="CG16721" /locus_tag="Dmel_CG16721" /gene_synonym="Dmel\CG16721" /map="5C6-5C6" /db_xref="FLYBASE:FBgn0029820" /db_xref="GeneID:31520" CDS 356..1840 /gene="CG16721" /locus_tag="Dmel_CG16721" /gene_synonym="Dmel\CG16721" /note="CG16721 gene product from transcript CG16721-RB; CG16721-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_001284913.1" /db_xref="FLYBASE:FBpp0308971" /db_xref="GeneID:31520" /db_xref="FLYBASE:FBgn0029820" /translation="MDAQENRSEQSGQSGDHEEHEERRIRTDSESSVESMTRFVLPSL DGTPPKIVTLDEVSSMFKNLRNMELAHEIALNPDFKLQKYEPPSDSLEGAIKKMVHKA FWDLLRVQLDRQPPSYDQAIRLLAEIKECFPQLLSPNNERALAHINEVLDDSVIRQQA ERGTLDFRAYANFVINILSRSCSPARDEAVAALRKIDDVVDTFRCILELMTLMKLDMA NFMLRLARTEIAANSVQYEKEKFSKYLREFHGNVGFPATEDWLQRHRSGSSDDETIYN AYMQLIDYPADKEFPELLRIDKERFAGLSWRAQRLILCASLISVAQGMPIISQRRENR IKLAQQLDIIVQDIKNQDQVASTIESCYEQIRSFVNKALEQENLPALSDADQAALKNQ VLKLANKTSPVPSLMAKRLDGYVRVTLRSNGSIPPPPSGFADYQEELVAFIASFRRLV SYNHAVFGEHFHQILNKTLPGEETEATTSTASGINPGQAQTAKP" misc_feature 560..1753 /gene="CG16721" /locus_tag="Dmel_CG16721" /gene_synonym="Dmel\CG16721" /note="T-complex protein 11; Region: Tcp11; pfam05794" /db_xref="CDD:461743" ORIGIN 1 tttgtgtgtg tgtgcgagtc acgtttaacg ggttccttcc gtgtgtttgt ttacagtggg 61 tattggctaa tacctatttc gaaaataaca attgaaacac tatttttggt tgagaaatat 121 gcgcacacag caacaggcga actgaccccg agcggagctt tagcgacgac ctcgaacaaa 181 gaacaaagaa agcccgagtg cagttgccaa ttgccttgta ataatcacca agccatatat 241 acaactggct ctaaccggtg gtaaccaaat tcgcatttgg tcgaaaccag ttgctgcagc 301 tgcctaacgt cgcacttccg cccgtgagga gacaacaaag gactggaatt tgaatatgga 361 tgcccaggag aataggagtg aacagtcggg acaatcgggc gaccacgaag agcacgagga 421 gcgccggatc cgtacggaca gcgagagttc cgtggaaagc atgacgcgtt tcgtgctgcc 481 cagcttggat ggtactccgc cgaaaattgt gaccctggac gaagtgtcca gcatgttcaa 541 gaatttgcgc aacatggagc tggcccacga gatagccctc aatccggact tcaagctgca 601 gaagtacgag ccgccctcgg atagtttgga gggcgccatc aagaagatgg tgcacaaggc 661 cttttgggat ctgctgcgtg tgcagctgga ccgccagccg ccatcgtatg atcaggccat 721 ccggctgctg gctgagatca aggagtgctt cccgcagctg ctgtcgccca acaacgaacg 781 tgccctggcc cacatcaacg aggtgctgga tgactccgtc atccgccagc aagcggagcg 841 gggtaccctg gactttcgag catatgccaa ctttgtgatc aacatcctgt cgcgatcctg 901 ttcgccagct agggacgaag cagtggccgc tctgcgcaag atcgacgatg tggtggacac 961 gtttcgctgc attctcgagc tgatgacgct gatgaagctg gatatggcca actttatgct 1021 tcgactggcg cgcaccgaaa tcgctgccaa ttcggtgcag tatgagaagg agaagtttag 1081 caagtacttg cgcgagttcc atggaaatgt tggttttccg gccactgagg attggctgca 1141 gcgtcaccgg tccggtagca gcgatgatga gaccatttac aatgcctaca tgcagctgat 1201 tgactatccg gccgacaagg agttcccgga gctgttgcgc atcgacaaag agcgcttcgc 1261 cggcctaagt tggcgagccc agcgcttgat cctgtgcgcc tcgctcatct cggtggccca 1321 gggcatgcct atcatatcgc agcgccgcga gaaccgcatc aagctggccc agcagctgga 1381 catcattgtg caggacatca agaaccagga ccaagtggcc tctaccattg agagctgcta 1441 cgagcagatt cgctcctttg tgaacaaggc cctggagcag gagaacttgc ctgcgctgag 1501 tgatgccgac caggcggcgc tcaagaacca ggtgcttaag ctggccaaca agacgtcgcc 1561 ggtgcccagt ttgatggcca aacgattgga tggctatgtg cgcgtaacac tgcgctccaa 1621 tggcagcatt ccgccgccgc cctcaggatt cgcggactac caagaggagc tggttgcatt 1681 tatcgcctcg ttccgtcgtc tggtgtccta caaccacgcc gtgttcgggg agcacttcca 1741 ccagatactc aacaaaacgc tgcccggtga ggaaacggag gctaccactt ccacggccag 1801 tggcataaat cctggccagg ctcagactgc caagccttag gtggatttgt ctaccgtctt 1861 aggcaacaca agataccagt atacaacact cagacacacc tgtaggcgaa caacagatct 1921 ggcggagatc tgcatgatgt tagggcaacc ggagtggcgg atagcatctt ccgtgtggag 1981 gaggagggat tccgcattcc gcagctgctt tcccatgtga cgtgacactt gcgtagaaaa 2041 tttgacgcac gcacccgtaa ccaccaagta gaaatgagta ctccagatgc aaatccccct 2101 gcaaaaaagc cagtgggatc cgaggcatct gaaaggaatc aaaaatgtgc tggagcgtct 2161 gtgataacaa gaatattcaa cacaaaattc aaatttttgg gggttaagaa aagtgaactc 2221 gtgaattatg tgtgctcctc aattttcgta atgtaaaccc cctctttata gtacatacat 2281 atatatatat attatgatta tacacgtgta ccctaacccc ggactaatcc tatatcttag 2341 acctttgtga ccgtaactcc cattgaattt attttgattg tttcgattga ttagcagtgt 2401 ttcgactgaa tcttcacgaa tatatctata cctagtttac cg