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LOCUS NM_001297962 2956 bp mRNA linear INV 26-DEC-2023 B (CG15784), mRNA. ACCESSION NM_001297962 VERSION NM_001297962.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2956) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2956) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2956) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2956) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2956) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2956) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2956) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2956) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2956) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2956) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2956) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2956) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2956) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2956) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2956) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2956) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2956) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2956) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2956) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2956) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2956) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2956) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2956) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2956 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2956 /gene="CG15784" /locus_tag="Dmel_CG15784" /gene_synonym="Dmel\CG15784" /map="4F10-4F10" /db_xref="FLYBASE:FBgn0029766" /db_xref="GeneID:31461" CDS 1110..2774 /gene="CG15784" /locus_tag="Dmel_CG15784" /gene_synonym="Dmel\CG15784" /note="CG15784 gene product from transcript CG15784-RB; CG15784-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_001284891.1" /db_xref="FLYBASE:FBpp0309402" /db_xref="GeneID:31461" /db_xref="FLYBASE:FBgn0029766" /translation="MSELSRLQQQQQQDQDRERVSQELIDCDIDFVEDTTSKVEEEAR MPPASSKRYTKALKKVTKVQRMLEQAMILLAEEEARCRQQEQEQGTKRTKKQLKKKAK KDKKKAKKLAKQQAKKQAEEQTAAGEEPSNTSSSSSSSSSSSSSSSSSSSSSSEDEEV FYNGYGWISNPWRRGPHGHHGFGRRLGHGFGHKHGRKHGHKHGHGPHHHGRHGHHGRP HHHHPHGHHFGPHFGPHFGPHAGPSPFDFDRRSFRGPWHDQSQFFQWMGLPWALDNAA ANRRSHSLPRLSRRDCRGDLGFGFGPGYGYGYGQTRPRHGRRLERSLSRSTSGSLERK HCRKPRSSSSSSSSSSSEDEKKRQKCKGKGKGKEKKRQQRSSSSSSSSSSSSSSSSSS SSSSSDGEVQKIPHRRGHHFGPPHGHHHFGPRHEGYRPHHGGHHGHHFGPHHGPFVEH GHGPQFGPFFDVPQRESGEGPRFEHQPRPEFPIAHHRPPPAEFPPGRRSRSLSRSHCR KEKQESFPKVEREERKKGKKKHGKRAHGHGHGHGHGHGHGHGHGRD" ORIGIN 1 acagcctgtg ttgaattttt gttgcattgg aatttaagtt ccaatatgaa aaatgtcatt 61 tacagatgga ttatctactt agtgcatgag tgataactaa tcatggagca ttatgagcat 121 atccatctga gaatgtaacg aatgatccct gatccctgat ccccgatgcc taaatgtcct 181 gcaaagtgag ttcggttcct ttttgggctg tgaactttgc caggaagacc accaattcca 241 ttttccagac tgttctttat ccatttcgat atttgcagtg tctggcgaaa ttcagcatag 301 acttaatttc gttaatttga atcatttgtt tagttttttc ttgtgctgcg ttttgtggag 361 ctatttcatc acatgacgaa actcttgcaa aaaattcccc actgccaaag ctttttttga 421 agcgttattc cggttttatt tagctttgtt ttgttttgtt ttgataatcg gagaacgacg 481 caaaatccac gtactcgata gcaaattgtg aaaacaaacg cgcgcgttgg tattggtgag 541 agagcagcga gctacagacg agcctcccta acgtggacct agatcaaccg cactcacgtt 601 agtctcaatc aatgtgttgc aaataatatt attttttttt tgttatttag cgccagtttt 661 tagaatatgt tagatgcaca tttagattgc agattttgtt tatttagata cgttttatat 721 ttcatggatt gaattttaag gccaagattc acacacctat aaatttgcga agggcttttt 781 ctgttgtcta ttgaaatgtt taatttgtat tgaggttcca ctgttccccg tttttgttct 841 gcgacgcatt tcagtgctcc accagtgggg cgttctcacc gcttccttgc ccctttgccc 901 ctttgccgcc ttgccgctcc gctggcgccg ccaaccgccg acgccgctga gcgtataaaa 961 agtgccggcc ggcaagcgaa tggcatcagt ttgcaagctt tcagctttgt ggcatagcgt 1021 atcccagcga actctaaacc gttaaaccaa gcaaaaaagc aactagtatt acaccagtga 1081 aggtaaatcg cattgaagat actatcaaca tgagcgagtt gtccagactg cagcagcagc 1141 agcagcagga tcaggatcgg gagcgtgttt cccaagagct gatcgactgc gatattgact 1201 ttgtggagga tacgacctcc aaggtggagg aggaggccag gatgccacca gccagttcca 1261 agcgatacac caaagccctg aagaaggtga ccaaggtgca gcgcatgctg gagcaggcca 1321 tgatcctgct ggccgaggag gaggccaggt gtcggcagca ggagcaggaa cagggcacca 1381 aaaggaccaa gaagcagctg aagaagaagg ccaagaagga caagaagaag gccaagaagc 1441 tggccaagca acaggccaaa aaacaggcgg aagagcagac ggcggctggc gaggagccct 1501 ccaacacctc cagctccagc tcttccagct ccagctcatc cagttccagc tcctccagtt 1561 cgagctccag ctccgaggac gaagaggtat tctataacgg ttacggctgg atcagcaatc 1621 catggcgccg aggaccacat ggccatcacg gcttcggtcg tcgtcttggc cacggttttg 1681 gccacaagca tggtcgcaag catggccaca aacatggtca cgggccgcat catcatggcc 1741 gacatggaca tcatggacgg ccgcaccacc accatccgca tggtcaccac tttggtcccc 1801 attttggacc acactttgga cctcacgctg ggccctctcc ctttgacttc gatcggagat 1861 cctttcgcgg accttggcat gatcagtccc agttttttca atggatgggc ctgccgtggg 1921 ccctggacaa tgccgcggcc aatcggagga gccactcgct gcctagacta tctaggcgcg 1981 actgtcgtgg agatctcgga ttcggattcg gaccaggata cggatacgga tatggccaaa 2041 cgcgtccacg acatggccgt cgactagaga gatcactttc ccgttcaaca tccggttcgc 2101 tggagaggaa gcactgccgc aagccgaggt ccagttccag ttccagctcc agttcttcct 2161 cggaggatga gaagaagagg cagaagtgca agggcaaggg aaagggcaag gagaagaaaa 2221 gacagcagcg ctcctcatcc agctcctcat cgagctccag ctccagctcc agctccagct 2281 ccagctccag ctccagctcc gatggcgaag tgcagaagat tccccatcga cgcgggcacc 2341 acttcggacc tccacatggc caccaccact ttggtccgcg ccatgaaggt taccgtcccc 2401 atcacggcgg acaccatggc catcactttg gtccacatca tggtccattt gtcgaacatg 2461 gacatggccc ccaattcgga ccattctttg acgttcccca aagagaatcc ggtgaaggac 2521 cgcgttttga gcaccagccc cgtccggagt ttcctattgc ccatcatcga ccaccaccag 2581 ctgagttccc tccaggtcgt cgcagtcgtt ctctgtcccg atcccactgc cgcaaggaaa 2641 agcaggagag tttccccaaa gtcgagaggg aggagcgcaa gaagggcaaa aagaagcacg 2701 gaaaacgcgc tcatggacat gggcatggac atggacatgg acatggccat ggacatggac 2761 atggacgtga ttaggcaatc gcagccagcg tttaagatgc attaagattc cttcaataca 2821 acctcccaca catataacct tcaatattac tatacattta acacccagaa gcttctattc 2881 tattattcta taaaaaatca ttaaaaaaac atctaaaaaa atgaaattaa ataaaaaaaa 2941 aacaaaactc aaatct