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LOCUS NM_001297943 2135 bp mRNA linear INV 26-DEC-2023 N-acetyltransferase (Hgsnat), transcript variant B, mRNA. ACCESSION NM_001297943 VERSION NM_001297943.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2135) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2135) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2135) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2135) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2135) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2135) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2135) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2135) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2135) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2135) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2135) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2135) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2135) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2135) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2135) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2135) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2135) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2135) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2135 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2135 /gene="Hgsnat" /locus_tag="Dmel_CG6903" /gene_synonym="CG6903; Dmel\CG6903" /note="Heparan-alpha-glucosaminide N-acetyltransferase" /map="4D6-4D6" /db_xref="FLYBASE:FBgn0029737" /db_xref="GeneID:31423" CDS 326..2056 /gene="Hgsnat" /locus_tag="Dmel_CG6903" /gene_synonym="CG6903; Dmel\CG6903" /EC_number="2.3.1.78" /note="CG6903 gene product from transcript CG6903-RB; CG6903-PB; Hgsnat-PB" /codon_start=1 /product="Heparan-alpha-glucosaminide N-acetyltransferase, isoform B" /protein_id="NP_001284872.1" /db_xref="FLYBASE:FBpp0310139" /db_xref="GeneID:31423" /db_xref="FLYBASE:FBgn0029737" /translation="MSLFVEYTEPKWRHLDMRALSVDEFYLYLRSEFSSQTHLYSLSD ECYTCPYTKVKALPAADVAAVVVEPLRLSSAYSLNFKIFDLDQGHYAYDNVSSLCWLR RSDLQEFGVYNLTLQANGTCAFAVDKPGVPINYAFIAVFVLVAALLIALKLVSCAWRY YRYDEATAAADSIGEAATKATQRKRLRSLDTFRGISIVLMIFVNSGGGGYAWIEHAAW NGLHLADVVFPSFLWIMGVCIPLSVKSQLSRGSSKARICLRILWRSIKLFVIGLCLNS MSGPNLEQLRIMGVLQRFGVAYLVVAILHTLCCRREPISPQRSWQRAVHDVCLFSGEL AVLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNAHPKCIGGAAGYADLQVLGNAH IYQHPTAKYVYDSTAFDPEGIFGCILSVVQVLLGAFAGVTLLVHPNFQSRIRRWTLLA ILLGLIGGALCGFSREGGAIPMNKNLWSLSFVCVTVSLALLILSLMYYFIDVRETWSW SGYPFTECGMNAIVMYVGHSVLHKMLPWHWRIGEMNTHFMLLLEATWNTLVWVGIALY LDAQEFYYSV" misc_feature 869..2029 /gene="Hgsnat" /locus_tag="Dmel_CG6903" /gene_synonym="CG6903; Dmel\CG6903" /note="Predicted acyltransferase, DUF1624 domain [General function prediction only]; Region: COG4299" /db_xref="CDD:443440" ORIGIN 1 ctagttatcg cctatcgctt gttttgttgt cgccttgttg ttgcttccgt ttgttgttgc 61 tattggcata gcggttttgt ttttattgcg cactcgaaat tgttttgtta tttgctggcg 121 atacgattcg aaaaacgctc ctcagatggt gcaaaattta gtttagtcca atccagacgc 181 tcgtcgcgtt taaatgcaag tttgtttgtg tctgtgtcgt aagtaactgt tgaatgcaat 241 ttggctattt ggcaattgca gttgcaactt tgcaaactgc aactttgtga atgagaagcg 301 cgacaagaac gcaaatcacc gaaaaatgtc gctttttgtg gaatatacgg agccgaagtg 361 gcgccacctg gatatgcgcg cgctatccgt tgacgagttt tacctgtacc tgcgctcgga 421 gttcagcagc cagacccatc tgtactcact gtccgacgaa tgctacacgt gtccgtatac 481 caaagtgaaa gctctgcccg ctgccgacgt cgctgccgtc gtcgttgaac cgttacgttt 541 gagttcggca tattcgctga atttcaaaat attcgacctc gatcagggtc actatgccta 601 cgacaatgtc tcgtcgctct gctggctgcg tcgcagcgat ctgcaggaat tcggtgtcta 661 caacttgacc ctgcaagcga atggcacctg tgcctttgcc gtggacaagc cgggcgtacc 721 aattaattac gctttcatcg ccgttttcgt tctggttgcc gccctgctaa tcgccctgaa 781 gctagtgagc tgcgcctggc gttattatcg ctatgacgag gccaccgccg ctgccgacag 841 catcggcgaa gccgccacca aggcgacgca gaggaagcgc ctccgcagcc tggacacctt 901 tcgcggaatt tcgattgttc tgatgatctt cgtgaacagc ggcggcggcg gttacgcctg 961 gatcgagcat gcagcctgga acggactaca cttggccgat gtcgtcttcc cctcgttcct 1021 ctggatcatg ggcgtgtgca taccgctctc cgtcaaatcg caattgtcgc gaggcagcag 1081 taaggcgagg atttgcctgc gcatactgtg gcgatcgata aagctgttcg tcatcggcct 1141 gtgcctcaac tcgatgagcg ggccgaatct ggagcagctg cgcatcatgg gtgtgctgca 1201 gcgattcgga gtggcatacc tggtggttgc gattcttcat actttgtgct gtcgcaggga 1261 gcctatcagt cctcaaagat cctggcagcg cgccgttcac gatgtgtgcc tgttcagcgg 1321 agagttggct gtgctgctgg ccctggtggc cacctatttg ggcctgacct tcggcctacg 1381 cgtgcctggc tgtccgcgcg gctatttggg ccctggcggc aaacacgact acaatgccca 1441 tcccaagtgc attggtggcg cagcgggcta tgcggacctt caggtgctgg gcaatgcgca 1501 tatctaccag catccgactg ccaagtatgt ttacgattcc acagccttcg atccagaggg 1561 tatattcggc tgcattctaa gcgttgtgca agtgctgctc ggcgcctttg ccggcgtaac 1621 actgcttgtg catcccaact ttcagtcaag gatccgtcgc tggacactac tcgccattct 1681 tctgggcctc attggcggtg ctctgtgcgg attctctcgt gagggcggcg ccatacccat 1741 gaacaagaac ctttggtcgc tgtccttcgt gtgcgtcacc gtcagcttgg ccctgttgat 1801 tctctcactg atgtactact tcatcgacgt gcgggagacg tggagctggt cgggctatcc 1861 cttcaccgaa tgcggcatga acgccatcgt gatgtacgtg ggccactcag tgctgcacaa 1921 gatgctgccc tggcactggc ggatcggcga gatgaacacg cacttcatgc tcctgctgga 1981 ggccacgtgg aacacgctgg tctgggtggg catcgcgctg tatctggacg cgcaggaatt 2041 ctactacagc gtgtagggcc acacgagagt aaccatatgc acaatcaatt caattgccaa 2101 ataaattaga tactatcgtt gtacgatcgc aaatc