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LOCUS NM_001297936 2526 bp mRNA linear INV 26-DEC-2023 B (CG3081), mRNA. ACCESSION NM_001297936 VERSION NM_001297936.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2526) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2526) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2526) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2526) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2526) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2526) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2526) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2526) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2526) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2526) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2526) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2526) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2526) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2526) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2526) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2526) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2526) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2526) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2526) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2526) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2526) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2526) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2526) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2526 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2526 /gene="CG3081" /locus_tag="Dmel_CG3081" /gene_synonym="Dmel\CG3081; EG:84H4.4" /map="4C10-4C10" /db_xref="FLYBASE:FBgn0025613" /db_xref="GeneID:31395" CDS 1087..2460 /gene="CG3081" /locus_tag="Dmel_CG3081" /gene_synonym="Dmel\CG3081; EG:84H4.4" /note="CG3081 gene product from transcript CG3081-RB; CG3081-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_001284865.1" /db_xref="FLYBASE:FBpp0310224" /db_xref="GeneID:31395" /db_xref="FLYBASE:FBgn0025613" /translation="MPLHSITEKPNERCPSPVVPAYANFELAKRMHQDNLDHQPLPDC VADLAFRRAQISGGHAGLALEIDPIATGVGVKTHNAGPTHCTKMKVFRPKTGGGIVPR ALGNGDAFRGVGSAPAKKMGPMDLAICWDFKPANPSDEPRLARHIDGSNDSAGPAVFT CVKTPREEQSSDLGRSAGVFTSTLGEADFFDKDILRKRTDFGGARVDREDPCACDYSP PARQRARSVSRDSSASHCRRGSGIGGPTGGVSFGNLAELPGRGMPDRLAKQYQSSPLL GDKAYQALREKYLGPDSGQDCRAMDCRPTGGPPCKRDVLLRRPARRLCHKVAPAPRCC PPSFGGHGHHHGHGHGHGHCLTSKAAFRAGVPKHNASGDFVGIEPGCGGGGGGGGRVL VVPRPRQPYAKKNYDIETLVPPFQSQAGGAGQGGYPEHWRLASVYQHAYKPIDQRRRP LLQTVYK" misc_feature 2260..2457 /gene="CG3081" /locus_tag="Dmel_CG3081" /gene_synonym="Dmel\CG3081; EG:84H4.4" /note="Domain of unknown function (DUF4812); Region: DUF4812; pfam16071" /db_xref="CDD:465004" ORIGIN 1 gtgacggaat ttcgaaaaga atctattcga atcgcactcg agaatcaatc gaaacgcctg 61 gcgttaatgg tttaccaatt ggccagggcg acagctgttc ggccagcgga aattgaaatt 121 ggaaaaattg aatggagcat tgaaagaagc agaagcagga ggcggagcac aatccacagg 181 atacaggagc tttggaccaa aggatagtcg gcggcagagc gtgaaattag cttaagtgct 241 tgtcgcctcg accaggacac accagtggat acaattcgaa ggccgattcc agtcgaagcg 301 tctcaacaac tgggaatatc cgcgattctc accaccccgc ccacgtggtc tgcagaagaa 361 cgccaaggtt gtggcggcca ataacggtca cctgctgccc gaagtgataa aggagggcaa 421 ctcatttggc caatatcgtg gaacctacga gctaccgcgt cgaataaccc gtgccttttg 481 cgcccactac gatgcctgtc tgagtgggcg gtacaagttt gttgactttc cgcgtgacct 541 gtgcaattgt cagcgagaga accgcagggc actggcctgc gatcagcggt tgaccttggg 601 ccacaaggac gatccctact ggatgcgcga acggtgccag acgaagtgcg agggactaca 661 gaagctgagg gcgttgagcg agcggagtgc gcgctgcaat cgggccaagt gcgacgtggt 721 gctctcccgg aactgagcta cacgccgggc gacctaacag agccgcagtt ccggctgccc 781 tcgcaccagg agctcctcga ccagaaacgc aacagcacgg acagcgtgcc acttggtcgt 841 ctcaccttgg acacgcgcga cacgcagccc atcaagtaca gggagcagct gggctcggcg 901 gccggtcgtc aatttccggc attggcagcg gcccaaaatc gctatacgga tcacttggag 961 cgcagcagcg agttgagctt tgcgtgcctg gagccgggca aggatctaat ctcattgccg 1021 acggtgggta tacgaagctt tgatctcgat cccgtatccg tatccgaacc cgatttgatc 1081 aagaagatgc cgctgcactc gatcacggag aagcccaacg agcggtgtcc atcgccagtg 1141 gtgccggcat atgccaattt cgagctggcc aaacggatgc accaggacaa tttggaccac 1201 cagccgctgc ccgattgcgt cgccgatttg gcattccggc gagcgcaaat atccggcgga 1261 catgctggcc tggccctgga aatcgatccc attgccacgg gcgtgggtgt gaaaacgcac 1321 aatgctggtc cgacgcactg caccaagatg aaggtctttc gtccgaagac cggcggtggc 1381 atcgtgccac gtgccctcgg caatggcgat gcctttcgag gtgttggctc cgctccggcc 1441 aaaaagatgg gacccatgga tttggccatt tgttgggact tcaagccggc gaatccatcg 1501 gatgagccgc gcctggccag gcacatagat ggctccaatg actccgctgg accggctgtc 1561 ttcacctgcg tgaaaacgcc tcgcgaggaa cagtcctcgg acttgggccg atcggctggc 1621 gtcttcacca gcacgcttgg tgaggccgat ttcttcgaca aggacatcct gaggaagcga 1681 acggattttg gcggtgcccg tgtggatcgc gaggatccgt gcgcctgcga ctactcgcca 1741 ccggccagac aaagagcacg cagtgtctcc cgcgattcca gtgcatcgca ttgcaggcga 1801 ggatcgggca tcggcggtcc aactggcggt gtgagtttcg gcaatttggc ggagctaccc 1861 ggtcgcggga tgcccgatcg tctagccaag cagtatcaat cgtcacccct gctgggcgac 1921 aaagcctacc aggctttgag ggagaaatat ttgggtccgg actctggaca ggattgcagg 1981 gccatggatt gccggccaac gggtggtcca ccatgcaagc gagacgttct cctccggcgt 2041 ccagctcgac gtctctgcca caaggtggct ccagctccca gatgctgtcc cccatcgttc 2101 ggcggacatg gtcatcacca tggacatgga cacggacacg gacattgctt gaccagtaag 2161 gcggcatttc gcgccggagt gcccaagcat aatgcctccg gtgatttcgt gggaatagaa 2221 ccgggctgcg gaggaggtgg cggtggcggt ggtagggttc tggtggtgcc acgcccccgg 2281 cagccgtatg ccaaaaagaa ttacgacatc gaaaccctgg tgccgccctt ccaaagccaa 2341 gcgggcggag cgggtcaggg cggctatcca gagcactggc gattggccag tgtctatcag 2401 cacgcctaca agcccatcga ccagcggcgg cgaccccttc tccaaactgt ctacaagtag 2461 gtgtgctcca ggatggcagt ccgctcaaga gagaaatgtc cggacaaacg ggataatgaa 2521 taattg