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LOCUS NM_001297935 2876 bp mRNA linear INV 26-DEC-2023 (Alms1b), mRNA. ACCESSION NM_001297935 VERSION NM_001297935.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2876) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2876) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2876) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2876) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2876) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2876) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2876) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2876) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2876) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2876) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2876) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2876) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2876) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2876) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2876) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2876) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2876) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2876) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2876) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2876) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2876) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2876) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2876) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2876 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2876 /gene="Alms1b" /locus_tag="Dmel_CG12184" /gene_synonym="alms1b; CG12184; Dmel\CG12184; EG:66A1.3; GH15731P" /note="Alstrom syndrome 1b" /map="4C10-4C10" /db_xref="FLYBASE:FBgn0025387" /db_xref="GeneID:31392" CDS 103..2583 /gene="Alms1b" /locus_tag="Dmel_CG12184" /gene_synonym="alms1b; CG12184; Dmel\CG12184; EG:66A1.3; GH15731P" /note="CG12184 gene product from transcript CG12184-RC; CG12184-PC; Alms1b-PC" /codon_start=1 /product="alstrom syndrome 1b, isoform C" /protein_id="NP_001284864.1" /db_xref="FLYBASE:FBpp0310136" /db_xref="GeneID:31392" /db_xref="FLYBASE:FBgn0025387" /translation="MSQSAGDIRRPIKSPQMQNKKTQTLESVHKSHKHTKKCQCKSRR QDSKVSSCQTDIHHPEREQQEIQPLMRDQRKAKQRHEKDHQLEREQQGIQQLTRDQRK ATKREKVREQERQYTAAQFEKIRGNRRHVSKENQQPENPVVNPSTGVTASSSTTSLDV GSGSRPRGVLDIGIELVCSLVKSRSLSQGQKKKLVRDIARRISCLELTESSTSSRSLS SSSKEQLKVPTGSLQQVAATNTNQSNARSSSKAERIAPPVPAPRKRAAIGSSSPLPES VSYSGSTSGSGEVITQKTNIPNRNASTDADIEPLDLQDWLNPMTLSEIEFEERLKGGT DSERRRQLHWVKTEINRMQEFKNLLESISLPSKSQKKANTESATAAQIPSSMRCMGDQ KERPDKEYLLRQEMSAEAESKEMENSETTTTPPPPVRIESVGVNVTNSDPSTLPAPPP TQPPPPPPHLNQRNLQNRKKMATPLLVSGSSTSGGGRSESVCSFVQQRQRQFCEHYEN EQLEEFVLLQKQKLYQLRKQLNQQKDILIQRQQHCGQRTYVHQQHCPRRQQEAQDQHD EREQYMQMQYAQAAGAYASGAVGNEAIYHQVVNPQGVASYVQATMVSTETQNEATATG GAGGSSITRCETTTRQYDDVACQRVRRGHKETRMNAERMQRQVRPRAISYVIQFTPTG SSEVIEKPPSLQDQLQLARPEFCANAKQRKAILNEMQMIRNARRQELDNVLSQSTSME ALNRHLEQLPPAANTRVKLFTTREMKAITSKRCKNLPEVLAAQSRQEEEQRRRSNRLM RDAFNKRLKSRVASGNISQRGNHLEKIE" misc_feature 2176..2544 /gene="Alms1b" /locus_tag="Dmel_CG12184" /gene_synonym="alms1b; CG12184; Dmel\CG12184; EG:66A1.3; GH15731P" /note="ALMS motif; Region: ALMS_motif; pfam15309" /db_xref="CDD:464634" ORIGIN 1 ccgaaatcgg aagtaactca gacgaaaccg aatgaataca ctataattcc tattgtattg 61 gccagtagcc ccagttttcg ttccgtagca gttacccaaa ccatgtccca atccgcgggg 121 gacattcgca gacctatcaa gtcgccccag atgcaaaaca aaaaaaccca gacactagag 181 tctgtccata agtcacacaa acacacaaag aagtgccaat gtaaatccag gagacaggat 241 tccaaagtta gctcttgtca gacggacatt catcatccgg aaagggagca gcaagaaatt 301 cagccactca tgagagacca aaggaaagct aaacagcgcc atgaaaagga tcatcaactg 361 gaaagggaac agcaaggaat tcagcaactc acgagggacc aaagaaaagc tacaaagcgc 421 gaaaaggtgc gcgagcaaga gcgacagtac acggcggctc agttcgagaa aattcggggc 481 aataggcggc atgtgagcaa ggagaaccag cagcccgaga accctgtagt aaatccctcc 541 accggcgtca cagcctcctc atcaaccact tcattagacg ttggatccgg tagtagaccg 601 cgaggggtat tggatatagg aatcgagttg gtctgttctc tggtaaaatc tcgcagcctc 661 agccagggac agaagaaaaa actcgtccgt gatatagcca ggcgtatctc ctgtctggaa 721 ctgaccgaat ccagcactag ttcgcgttcc ctgagcagca gcagcaagga gcagttgaag 781 gtgcctacag gttctctgca gcaagttgcg gccaccaata cgaaccaatc caatgcgaga 841 agctcatcca aagctgaacg tattgctcca ccagttcccg ctccacgaaa gcgagcagct 901 atcggatcat cttcgccact gcctgaaagc gtatcgtaca gtggctcaac cagtggctca 961 ggcgaggtga tcacccagaa gacaaatata ccgaatcgca atgcctcaac ggatgcagat 1021 attgagcctt tggatttgca ggattggctg aatcccatga ccctgagtga aatagagttc 1081 gaagagcgtt tgaaaggtgg cacggattcg gagcgaagga ggcagctcca ctgggtcaag 1141 acagagatta atcgcatgca ggaatttaaa aatcttttgg aaagtatcag tttgcccagc 1201 aagtcgcaga agaaagcaaa cacggaatct gcgacggctg cgcagattcc aagttccatg 1261 cgatgtatgg gcgaccagaa ggagcgaccg gacaaggaat atcttctgcg acaagaaatg 1321 tcagctgaag cagagagcaa agagatggaa aattcggaaa caacaacaac accgccgccc 1381 ccagtgagaa ttgaatcggt tggagtgaat gtgaccaatt ctgatccttc cacactgcca 1441 gcaccgcccc cgacacaacc accaccacca cctcctcacc ttaaccagcg gaatctgcag 1501 aaccgtaaaa agatggccac tcctttactt gtctcaggta gctctaccag tggcggcggt 1561 cgcagtgaaa gtgtctgctc ctttgtccag caaaggcagc gtcagttctg cgagcattat 1621 gagaacgagc agcttgaaga gtttgtattg ctccagaaac agaaacttta ccagctgcgg 1681 aaacagctga accagcaaaa agatattttg atacagaggc agcaacattg tggtcagcgg 1741 acttacgttc atcagcagca ttgcccgagg cgtcaacagg aagcacagga tcagcacgat 1801 gaacgagagc aatatatgca gatgcagtac gcccaggcgg cgggtgccta tgcatccggc 1861 gcggttggga atgaagccat ctaccaccag gtggtcaacc ctcagggagt agctagctat 1921 gtgcaagcaa caatggtgag cacagagaca caaaatgaag caactgcaac tggtggagca 1981 ggaggctcgt ccatcaccag atgtgagacc accactcgtc agtacgatga tgtggcatgt 2041 cagcgggtgc gaagggggca caaggagacc aggatgaatg cagagcgtat gcaacgccaa 2101 gtgcgtccac gtgctatatc ctatgtcatc cagtttacgc cgacgggcag cagtgaggtg 2161 attgagaaac ctccctccct gcaggatcaa ctgcagctgg ctcgtcccga attctgtgcc 2221 aatgccaagc agcgcaaggc catacttaat gagatgcaga tgattcgcaa tgctcggcgc 2281 caggagctgg acaatgtttt gagccagagt accagcatgg aggcgctgaa caggcatctg 2341 gagcagctgc ctccagcagc caatactcga gttaaattat ttaccaccag ggaaatgaag 2401 gcgattacct ccaaacggtg caaaaatttg ccggaagtgt tggccgccca aagtcgccag 2461 gaggaggagc agagacgtcg ctccaatcgt ttgatgcgcg atgctttcaa caagcgcctc 2521 aaaagtcgcg tggccagcgg aaatatatcg cagcgtggta atcatctaga gaagatcgaa 2581 taaggatttc cccacagcca ccgacaccag ttaccgacat caacacccac agccatggca 2641 cccaccagtt ttagtttttc attattatgc ttttgccact gccaagcttt gttatttttc 2701 tatatatttt aatcgatcac aattgtttaa gtccagtcca tacgtaatgt taaaatttaa 2761 tgtagccggc caattaactt taaacataga aaattatgtt gatctagcat ttgactaaat 2821 ttgtaatgtt tttaaaagaa ataaattgag aacgggtcga cgatcgattt aaatct