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LOCUS NM_001297900 2946 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001297900 VERSION NM_001297900.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2946) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2946) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2946) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2946) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2946) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2946) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2946) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2946) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2946) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2946) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2946) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2946) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2946) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2946) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2946) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2946) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2946) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2946) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2946) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2946) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2946) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2946) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2946) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2946 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2946 /gene="egh" /locus_tag="Dmel_CG9659" /gene_synonym="4ManT; beta1; CG9659; Dmel\CG9659; EG:BACR25B3.8; Egh; l(1)3Ae; l(1)zw4; zw-4; ZW-4; zw4" /note="egghead" /map="3A6-3A6" /db_xref="FLYBASE:FBgn0001404" /db_xref="GeneID:31239" CDS 845..2218 /gene="egh" /locus_tag="Dmel_CG9659" /gene_synonym="4ManT; beta1; CG9659; Dmel\CG9659; EG:BACR25B3.8; Egh; l(1)3Ae; l(1)zw4; zw-4; ZW-4; zw4" /note="CG9659 gene product from transcript CG9659-RD; CG9659-PD; egh-PD; zeste-white 4; egghead; beta1,4-mannosyltransferase" /codon_start=1 /product="egghead, isoform D" /protein_id="NP_001284829.1" /db_xref="FLYBASE:FBpp0309090" /db_xref="GeneID:31239" /db_xref="FLYBASE:FBgn0001404" /translation="MNSTTKHLLHCTLLITVIVTFEVFSGGIKIDENSFTLVDPWTEY GQLATVLLYLLRFLTLLTLPQVLFNFCGLVFYNAFPEKVVLKGSPLLAPFICIRVVTR GDFPDLVKTNVLRNMNTCLDTGLENFLIEVVTDKAVNLSQHRRIREIVVPKEYKTRTG ALFKSRALQYCLEDNVNVLNDSDWIVHLDEETLLTENSVRGIINFVLDGKHPFGQGLI TYANENVVNWLTTLADSFRVSDDMGKLRLQFKLFHKPLFSWKGSYVVTQVSAERSVSF DNGIDGSVAEDCFFAMRAFSQGYTFNFIEGEMYEKSPFTLLDFLQQRKRWLQGILLVV HSKMIPFKHKLLLGISVYSWVTMPLSTSNIIFAALYPIPCPNLVDFVCAFIAAINIYM YVFGVIKSFSLYRFGLFRFLACVLGAVCTIPVNVVIENVAVIWGLVGKKHKFYVVQKD VRVLETV" misc_feature 1394..1960 /gene="egh" /locus_tag="Dmel_CG9659" /gene_synonym="4ManT; beta1; CG9659; Dmel\CG9659; EG:BACR25B3.8; Egh; l(1)3Ae; l(1)zw4; zw-4; ZW-4; zw4" /note="Glycosyl transferase family group 2; Region: Glyco_trans_2_3; pfam13632" /db_xref="CDD:433365" ORIGIN 1 ggccgaatga ttcattcgca cgcggaatct cgatcgcagt tctggcggat gataaccgca 61 gcgcgctgga gtcattggat tcggatgtgg attttagtca tttggttggc ctgatggcat 121 cggccagctc tgacgtacaa acgcttgtat ctaggatatc gcaattgtcg aaggccgtcg 181 cttatcgtcg acggattgta aactgtgtac tcgcatgcgg gtccgattcg ccgggtgaag 241 agtttcttat caggctgtct gaagtgtcac aatagccggc caagtacagt ggccaccggc 301 tagggtggac agtatgcaaa ggcattatgg ccggaagaga agggggatat cttagaaatg 361 tctgaccagg aaacagagct gagagtctca aatgcaagca agccaacgcc agcggcagca 421 gcaaccacgt ccaagttcac caacagctga agaggaagcg gaggagacga gaccgcgaaa 481 cagtacagcc aggagctgat agagcatccg gtgcaccaca tatattgacc tgggggtgcc 541 tggaccaaaa caacttccgt tcctctcggc ggcaatcgct gagctttcag gcacaaacaa 601 cttacaaaca tttagtatct ttagccagtt agccgctggc tgactcatcc acagtcgttt 661 gagtcgggat cgaacgaacg aacaaacaag gcagataagg atttccgatt gcggaattgc 721 cagaattgca caagtctact taaggctctg gaggaccaaa gccacttaag ttacgttatt 781 acacacaaaa actaaaaact gaaaaaacaa aaaacaaaaa acaagacaca acccgcaaac 841 caagatgaac tccaccacaa agcatctgct gcactgcaca ctgctcatca ctgtgatagt 901 taccttcgaa gtattctccg gcggtattaa gattgacgag aactcgttca cgctcgtgga 961 tccttggact gaatacggcc aattggccac ggttctgctg tacttattgc gctttctcac 1021 gctgctcacg ctgccccagg tgctgttcaa tttctgcggc ctggtattct acaatgcctt 1081 ccccgagaag gtcgtcctca agggcagccc cctgctggcg cccttcatct gcatccgtgt 1141 ggtcacgcgc ggcgacttcc cggatttggt taagacgaat gtgctgcgca acatgaacac 1201 ctgcctagac acgggactgg agaactttct catcgaagtg gtcacggaca aggcggtgaa 1261 tctgtcacag catcgacgca tccgagagat cgttgtgccc aaggagtaca agacgagaac 1321 cggggcgttg ttcaagtcgc gtgccctgca gtattgcctg gaggataatg tgaacgtgct 1381 gaacgacagc gactggatcg tccatctgga tgaggagacg ctgctcacgg agaattcggt 1441 gcgtggtatc attaactttg tgctggatgg caagcacccg ttcggccagg gcctgatcac 1501 ctatgccaac gagaacgtgg tcaattggct gaccacattg gcggacagct ttcgggtctc 1561 cgatgatatg ggcaagctgc gtctgcagtt caagctcttt cacaagccgc tcttcagctg 1621 gaagggcagt tatgtggtca cccaggtgag tgctgagcgt tcagtgtcct ttgacaacgg 1681 aatcgacggt tcggtggccg aggattgctt cttcgcgatg cgggccttta gccagggcta 1741 cacgttcaac ttcatcgagg gcgaaatgta cgagaagtcg ccgttcacgc tgctggactt 1801 cctgcagcag aggaaacgat ggctccaggg cattctgctg gtggtccact ccaagatgat 1861 cccgtttaag cacaagctcc tgctgggcat cagtgtctat tcgtgggtca ccatgccgct 1921 gtccacgtcg aacatcatct ttgcggcact gtatcccatt ccctgcccaa atctggttga 1981 ctttgtgtgc gccttcatcg cggccattaa tatctacatg tacgtctttg gcgtaatcaa 2041 gtccttttca ctgtaccgct tcggtttgtt ccgattcctg gcctgcgtgc tgggtgcggt 2101 gtgcacgata cccgtgaatg tggttatcga gaatgtggct gtcatttggg gcctggtggg 2161 caagaagcac aagttctatg tggttcagaa ggatgtgcgc gtactggaga ctgtctagac 2221 tattttgtgg aactggatga gggaggaaag gagtcatcga gtgcagccat ggtcatcata 2281 tcgcccacag aaaccaaaaa ccaaattaag caaggcaaaa acaaacgaaa tttcgcacaa 2341 tttcgccagg ctcagtgcgt tgtcctggca caatctgatt gatttacttt atttgtacat 2401 tttataagca taagagtcac tcaacaatca cacccacacc cacacataca cctgcacaca 2461 cgcacatata attgttgttt cgttctaaag tcatggtcat tcacaacttt gccaaaaaga 2521 aaaagcaaat cagatcagat cagatcatag aaatcagcac ggaataaacg gaataccagg 2581 gtgaccgacc caaagaacaa atgcaataga caacgtcttg gagcgagatc tatgaagtgc 2641 atcactcact agaaaataca actattgcgg caataacaac aattggggca ataacaatga 2701 tccaagagga ccacacgcga aaactctcca ttaagtgtaa tttcattata tatatatatt 2761 tttttttttt gtatagtctg tagtgaaaga atgcgctata tttatataaa cgtaaatatt 2821 gtatgtacat tgtagattta ttattataat tacgattatt taaaaatgtg tacattgatg 2881 tattgaaaat ctgttaaatg tcattcacac cgaaaccaag gttaaaaaaa aaagcgaaaa 2941 gcaaac