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LOCUS NM_001297890 2928 bp mRNA linear INV 26-DEC-2023 E (CG2924), mRNA. ACCESSION NM_001297890 VERSION NM_001297890.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2928) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2928) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2928) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2928) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2928) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2928) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2928) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2928) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2928) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2928) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2928) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2928) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2928) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2928) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2928) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2928) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2928) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2928) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2928) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2928) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2928) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2928) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2928) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2928 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2928 /gene="CG2924" /locus_tag="Dmel_CG2924" /gene_synonym="Dmel\CG2924; EG:25E8.2; NICE5" /map="2F2-2F3" /db_xref="FLYBASE:FBgn0023528" /db_xref="GeneID:31214" CDS 669..1862 /gene="CG2924" /locus_tag="Dmel_CG2924" /gene_synonym="Dmel\CG2924; EG:25E8.2; NICE5" /EC_number="2.3.2.23" /note="CG2924 gene product from transcript CG2924-RE; CG2924-PE" /codon_start=1 /product="uncharacterized protein, isoform E" /protein_id="NP_001284819.1" /db_xref="FLYBASE:FBpp0312228" /db_xref="GeneID:31214" /db_xref="FLYBASE:FBgn0023528" /translation="MACLNTLKQEIKTLEKIFPKNHERFQILNSSVDELLCRFIDKNG KRYDIHANITETYPSSPPVWFAESEETSVTNAVQILSNTNGRDNHVINQVGILLRELC RLHNVPLPPDIDNLALPLQTPPPSASPLRCEQRPGGGGAGGGGGPHGNEETDSDQEEI EDPIGESEQESEGDEDLPLEMDDVRSTSKKDDMEVEHLATLEKLRQSQRQDYLKGSVS GSVQATDRLMKELRDIYRSDAFKKNMYSIELVNESIYEWNIRLKSVDPDSPLHSDLQM LKEKEGKDSILLNILFKETYPFEPPFVRVVHPIISGGYVLIGGAICMELLTKQGWSSA YTVEAVIMQIAATLVKGKARIQFGATKALTQGQYSLARAQQSFKSLVQIHEKNGWFTP PKEDG" misc_feature 1341..1820 /gene="CG2924" /locus_tag="Dmel_CG2924" /gene_synonym="Dmel\CG2924; EG:25E8.2; NICE5" /note="Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain of ubiquitin-conjugating enzyme E2 Q1, Q2, and related proteins; Region: UBCc_UBE2Q; cd23802" /db_xref="CDD:467422" ORIGIN 1 gattcatcga tgaccaacgt atcgccatcc gtggatcgct aatttgttgt tggtaaaaaa 61 aagctttaat gcccagcaca aaccaacaaa caaacaaacg catcaacagt ataagaaaac 121 gatagtaagt cgggaaaatc aaagtgcaaa tctgaacata aaataagcag agtgcgagca 181 agacagcgca tgctgggcgc cgcaggagct gtagaagaag aagcagtgag agtgaagttg 241 actggaagtg gagtggaaaa agaagagcga gaagagagcc agcgaaaaca acaaagaaca 301 accagtcgac tccaaaaatt gccctttcaa tctacctcca aacacgagca aaatcctcat 361 tctaataaaa agctcaataa ctaaatgagt aaacataata ttcacataaa gacgccctga 421 agaacaactt aaaaactaaa aagggtcatc tggagtgggc agataaaagc agctgacgga 481 caaaaaaaaa aaaaacattt aatcccatac cagctttcta cgcctggaag tcgcaaaggt 541 agagctcaag agagggggag ctagctccct gaaaccccag gaaccacaaa actccacttg 601 gaccacgaaa taatcataag cacgaaaaaa cacagaccag accagttgcc ttttaagccc 661 gccacaagat ggcgtgcctt aacaccctga agcaggaaat caaaacgcta gagaagatct 721 tcccgaagaa ccacgagcgc tttcagatcc tcaattccag cgtcgacgaa ctgctctgcc 781 gttttatcga taagaatgga aagcggtacg atattcacgc caacataacg gaaacgtatc 841 cctcatcgcc gccagtttgg ttcgccgaaa gcgaggagac gagcgtcaca aatgctgttc 901 aaatacttag caatacgaat ggacgtgata atcacgtgat caatcaggtg ggcatactgc 961 tgcgtgagct gtgccgcctt cacaacgttc cactgccacc cgacatcgat aatttggctc 1021 tgccgctgca aacgccgccg ccatccgctt ccccccttcg ctgcgagcag agaccaggtg 1081 gtggtggagc ggggggcggt ggcggacccc acggcaacga ggagaccgat tcggatcagg 1141 aggagatcga ggatcccatc ggcgagagcg aacaggagag cgagggcgat gaggacttgc 1201 cgctggaaat ggatgatgta cgcagtacaa gcaagaagga cgacatggaa gtggaacacc 1261 tagcgactct agaaaaactg cgtcaaagtc agagacaaga ctatctaaaa ggttccgttt 1321 cgggttccgt gcaggcaacc gatcgcttaa tgaaggaatt acgcgacatt tatcgctcag 1381 acgccttcaa aaagaacatg tattctattg agctcgtcaa tgagtcgatt tacgaatgga 1441 acattcgcct caagtctgtc gacccggaca gtccgctgca cagtgatctg caaatgctca 1501 aggagaagga gggcaaggac agcatactgc tcaacatcct gttcaaggag acgtatccct 1561 tcgagccgcc atttgtgcgc gttgtccatc cgattatctc aggcggctat gtgctcatcg 1621 gtggtgccat ctgcatggaa ttgctgacca aacagggctg gagctcggca tataccgtgg 1681 aagcggttat catgcaaatt gcagccactc tcgtcaaggg aaaggcgcgc atccaattcg 1741 gggctaccaa agcactgacc cagggccaat acagtttggc tcgagcccag cagagcttca 1801 aatctctggt gcagattcac gaaaagaatg gatggttcac cccgcccaag gaagatggct 1861 aaaacaagag agtccactga tgcacatcct tcctagagta acgcatgcca gcctacacca 1921 atcaacacca ctcctcacac cgccaaaatt agcctgtcca catccgccaa gcacacatcc 1981 cgcactcact gccggcttga tctgatatgt ctgatgtctg atctggtcag gaccaatatg 2041 gacgaagcgc ccatttttaa gaagatggcc cacacaatta cattgcttgc tgcgtcgatt 2101 gcgtagtggc ctgaagccgt gtaatctgta cagagtcttg gaaactggag ctgcatatat 2161 tggtgtaaaa gtgtcaaaaa aaaaatgagc agccgaagag tgtaaaatgt ctatgtctat 2221 atctgttatg tatatgagta tacttttaat ttaaattgta aatgtagtgg ctttgaacct 2281 tgaaaacagc aaccacaatc cccatacact ttacacacac ccctaaattg taaattagtt 2341 aagtcgaaat gtattcttat ttaagtttaa caaatccgtg gtatcttaaa tttttccctt 2401 tccctttaac tggtaagcaa gcaacacaag gaacggcatg ttgggaaaag ttgacgcgat 2461 gtcgatcgga atagatatat atatctatac atacatataa ttataattat acataaatat 2521 aaagatatat attaatatta gtgcgagagt ttagcttaag cagaataata cagaacgatg 2581 cgtcgaagat gagcaaattc taagtgtaaa ttcgtctttc caaataatcg taaaataacg 2641 taaatctaac tataaaaaag aattaaaaat gaaacctaaa tcgagtagtt ggagaacgaa 2701 aatcgtaaat atttgcaagt aaattaccca ttatattaaa aaaaagttcg ttttcgcggg 2761 cagctgtttt gctgccccat taacattgtt tttttttttt tattatgcgt aaaacggcag 2821 acaaaatttc attgtacatt tcaaaactga aattggcatg cacgacgaaa cgttcatttt 2881 aagtatgtat ttaataaaga aagatatata catgcgtaat gggtattg