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LOCUS NM_001297881 2738 bp mRNA linear INV 26-DEC-2023 variant B (Mct1), mRNA. ACCESSION NM_001297881 VERSION NM_001297881.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2738) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2738) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2738) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2738) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2738) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2738) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2738) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2738) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2738) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2738) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2738) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2738) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2738) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2738) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2738) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2738) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2738) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2738) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2738) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2738) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2738) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2738) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2738) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2738 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2738 /gene="Mct1" /locus_tag="Dmel_CG3456" /gene_synonym="CG3456; Dmel\CG3456; EG:103B4.3; MCT1" /note="Monocarboxylate transporter 1" /map="2E1-2E2" /db_xref="FLYBASE:FBgn0023549" /db_xref="GeneID:31198" CDS 413..2293 /gene="Mct1" /locus_tag="Dmel_CG3456" /gene_synonym="CG3456; Dmel\CG3456; EG:103B4.3; MCT1" /note="CG3456 gene product from transcript CG3456-RB; CG3456-PB; Mct1-PB" /codon_start=1 /product="monocarboxylate transporter 1, isoform B" /protein_id="NP_001284810.1" /db_xref="FLYBASE:FBpp0309617" /db_xref="GeneID:31198" /db_xref="FLYBASE:FBgn0023549" /translation="MVHGPPARRKSQQQHEACEMDMERQPTPPDGGWGWVVVFGSFMI HIVTDGMTYSFGIFYNEFLDYFNEGKGYTAWIASIMVGVTFSSGPISSSFVNRYGCRA VTIAGSILAASCIIVSMFAQNVLTLIITIGFGTGLGFGLIYLPAIVSVTQYFEAKRSL ATGIAVCGSGFGTFVFAPLTEFLIGNYGWRGAMLIIGGIVLNCIIFGAMFRPLELEAP PQTPPNTPSTPKLAKKSAIIDQNTTAAELEPLKVLPKDQYLQLPQRTDTAVSGGALCR SNSVGHNLKPNLNNNSNGAVNGQGPTLVTPPQAVVKSTSNDDIARKCHSQLQLTPLRD AHRERSASGTMYRPDALYQGSLHNLPDYVSSRNDLSRSMSGSGVIKRYGSLRQSNNVS QSQEEAKCCGCITCSKETRDTFAEMMNFSLLKDMVFVIFSVSNFCTSIGFNVPYLYVV AYAETLKLTKTDASYLISTIGVANTVGRIILGYISDKPWVNRLLVYNVCLTACGVSTA MVPLCHDFQSLAFYCCVFGFTIGAYVGLTSVILVDLLGLDKLTNAFGLLLLFQGIASF IGPPIGGWMYDLTDSYAPAFLMAGLMIAISGLVMFAIPPLQRLQVRKSERKPHTEHLA LS" misc_feature 512..2224 /gene="Mct1" /locus_tag="Dmel_CG3456" /gene_synonym="CG3456; Dmel\CG3456; EG:103B4.3; MCT1" /note="Monocarboxylate transporter (MCT) family of the Major Facilitator Superfamily of transporters; Region: MFS_MCT_SLC16; cd17352" /db_xref="CDD:340910" misc_feature order(545..550,557..562,569..571,674..676,923..928, 935..943,989..991,1217..1219,1226..1231,1313..1315, 1715..1717,1724..1729,1736..1744,1751..1753,1832..1834, 1844..1846,1997..2002,2012..2014,2024..2026,2072..2074, 2081..2086,2093..2098,2105..2107) /gene="Mct1" /locus_tag="Dmel_CG3456" /gene_synonym="CG3456; Dmel\CG3456; EG:103B4.3; MCT1" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340910" ORIGIN 1 gccttccgcc aattacgggt cgctggagtc cacggccaag cgattgtcaa ttaattactc 61 gcctaggttc gatatccaac ggctttggtt actgtgttcc gtggtacaag tgcccgtctc 121 agcttccgca tccgtgtacc gtgcgcatcg gtatcggcat cccaagcggc atcggtgacc 181 gtgacccaag gatcgaccgg tagcatcacg tgccacgtgc cggttcatca aaaagtgcaa 241 ggttgctgca acatgagccg ctggctttaa ggagcacatc ccatcagcaa cagcaggaga 301 agcagcagca gttgccacat acaggcagca agtgcaaccg gagaggagac ccaatcgcag 361 gtcaaggttc ttccggaaac caaagcaatc agcccagggc gacaccagca acatggtaca 421 cggaccgccg gctcgcagaa aatcacagca gcagcatgag gcctgcgaga tggacatgga 481 gcggcagccc acaccgccag acggcggatg gggatgggtg gtggtcttcg gctccttcat 541 gatacacata gttaccgatg gcatgaccta ctcctttggc atcttctaca atgagttcct 601 ggactatttc aacgagggca aaggctacac ggcttggatt gcctccataa tggtgggcgt 661 gaccttctca tccggaccga tcagctcgtc gttcgtaaat cgatatggct gtcgtgcggt 721 gaccatagcg ggctccattt tggccgccag ctgcatcatc gtgagcatgt tcgcccagaa 781 tgtcctcacg ctgatcatta cgatcggttt cggaacgggc ttgggctttg ggctcatcta 841 cctgccggcc attgtgagtg tgacgcagta tttcgaagcc aagagatctc tggccacggg 901 aatcgccgtc tgcggctccg gattcggtac gtttgtcttt gccccgctca cggagttcct 961 gatcggcaac tacgggtggc gcggtgcgat gctaattatc ggcggcatcg tgctcaactg 1021 catcatcttt ggggccatgt tccgaccgct ggagctagag gcaccgccgc agacgccgcc 1081 gaacacgccg agcactccca agctggccaa gaagtcggcc attatcgatc agaacaccac 1141 cgcggcggag ctggagcccc tcaaggtcct gcctaaggat cagtacctgc agctgccgca 1201 gcgcacggat acagcggtct cggggggtgc cctctgccgg tccaacagcg ttggccacaa 1261 cctcaagccc aatctgaaca acaactcgaa cggcgccgtc aatggacagg gacccacctt 1321 ggtgacccca ccgcaggcgg tggtgaagag caccagcaac gatgacatcg cccgcaaatg 1381 ccacagccag ttgcagctga ctcctctcag ggatgcgcat cgcgagcgga gtgccagtgg 1441 taccatgtac cgaccggatg ctctctacca gggctccctc cacaacctac ccgactatgt 1501 gagctccagg aacgatctga gccgttccat gtccggctcc ggcgttataa agcggtacgg 1561 atcccttcgc cagagcaaca acgtgtccca gagtcaggag gaggccaaat gctgtggctg 1621 catcacttgc tccaaggaga cccgcgacac attcgccgaa atgatgaact tctctctgct 1681 caaggacatg gtgttcgtga tcttctccgt gtctaatttc tgcacgagca ttggcttcaa 1741 cgttccgtac ctgtatgtgg tcgcctacgc ggagaccctg aaactcacca agacggatgc 1801 cagctatctg atatccacga ttggcgtggc caacacagtg ggccgcataa tcctgggcta 1861 catatcggat aaaccgtggg tgaaccgcct cctggtctac aacgtctgcc tcaccgcctg 1921 cggagtttcc actgccatgg tgccgctatg ccacgacttc caatccctgg ccttctactg 1981 ctgcgtcttt ggcttcacga tcggcgccta tgtgggcctg acctcggtca ttctggtgga 2041 cctgttggga ctggacaagc tgaccaacgc ctttggcctg ctgctgctct tccagggtat 2101 tgccagcttc atcggtccgc ccatcggagg ctggatgtac gacctgacgg actcgtatgc 2161 gccggccttc ctgatggccg gactcatgat cgccatcagc ggactggtga tgttcgccat 2221 tccgccgctg cagcgcctgc aggttcgcaa gtcggagcga aagccccaca ccgagcacct 2281 ggcccttagt tagtagttca ccgccaccca tccaccaccc acagtgccct gtttattcct 2341 actccatatt tttttgtttt tttttctact gtaactataa atctagatac gtactgatgc 2401 acacgacact tggttagatt aagtcctaga cctaggccag ccatgtaccg aggtatgcgt 2461 gtatgccgca gctatggcat atccgaataa ttgtgtacgg gcgactgtca ccgaaccgcc 2521 ggcttctgtc ccccgagcca tgacctctga ccccagaccc cagacccctg acccctgacc 2581 ccagacccca ttaaaggccc ccattgcaag tgcatgcaaa tgtatgccta cacgtacatg 2641 tacccatacc aaattattgt tattctatta tgactgtatg cctgtgcgtg tgtgtccgtc 2701 tgtgtatgcg ccattaaaga aagcttttgt acaacaac