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LOCUS NM_001297877 2467 bp mRNA linear INV 26-DEC-2023 (Cyp4d2), mRNA. ACCESSION NM_001297877 VERSION NM_001297877.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2467) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2467) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2467) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2467) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2467) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2467) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2467) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2467) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2467) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2467) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2467) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2467) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2467) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2467) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2467) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2467) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2467) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2467 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2467 /gene="Cyp4d2" /locus_tag="Dmel_CG3466" /gene_synonym="4d2; CG3466; Cyp4D2; CYP4D2; Cyt-P450-4D2; Dmel\CG3466; EG:152A3.4; P-450; P450" /note="Cytochrome P450 4d2" /map="2E1-2E1" /db_xref="FLYBASE:FBgn0011576" /db_xref="GeneID:31192" CDS 902..2407 /gene="Cyp4d2" /locus_tag="Dmel_CG3466" /gene_synonym="4d2; CG3466; Cyp4D2; CYP4D2; Cyt-P450-4D2; Dmel\CG3466; EG:152A3.4; P-450; P450" /EC_number="1.14.-.-" /note="CG3466 gene product from transcript CG3466-RB; CG3466-PB; Cyp4d2-PB; cytochrome P450 4D2; cytochrome P-450; cytochrome P450-4d2" /codon_start=1 /product="cytochrome P450 4d2, isoform B" /protein_id="NP_001284806.1" /db_xref="FLYBASE:FBpp0311678" /db_xref="GeneID:31192" /db_xref="FLYBASE:FBgn0011576" /translation="MLGVVGVLLLVAFATLLLWDFLWRRRGNGILPGPRPLPFLGNLL MYRGLDPEQIMDFVKKNQRKYGRLYRVWILHQLAVFSTDPRDIEFVLSSQQHITKNNL YKLLNCWLGDGLLMSTGRKWHGRRKIITPTFHFKILEQFVEIFDQQSAVMVEQLQSRA DGMTPINIFPVICLTALDIIAETAMGTKINAQKNPNLPYVQAVNDVTNILIKRFIHAW QRVDWIFRLTQPTEAKRQDKAIKVMHDFTENIIRERRETLVNNSKETTPEEEVNFLGQ KRRMALLDVLLQSTIDGAPLSDEDIREEVDTFMFEGHDTTTSAISFCLYEISRHPEVQ QRLQQEIRDVLGEDRKSPVTLRDLGELKFMENVIKESLRLHPPVPMIGRWFAEDVEIR GKHIPAGTNFTMGIFVLLRDPEYFESPDEFRPERFDADVPQIHPYAYIPFSAGPRNCI GQKFAMLEMKSTVSKLLRHFELLPLGPEPRHSMNIVLRSANGVHLGLKPRA" misc_feature 1097..2386 /gene="Cyp4d2" /locus_tag="Dmel_CG3466" /gene_synonym="4d2; CG3466; Cyp4D2; CYP4D2; Cyt-P450-4D2; Dmel\CG3466; EG:152A3.4; P-450; P450" /note="cytochrome P450 family 4; Region: CYP4; cd20628" /db_xref="CDD:410721" misc_feature order(1190..1192,1241..1246,1265..1267,1277..1279, 1298..1300,1823..1825,1832..1837,1844..1846,2030..2032, 2042..2044,2222..2230,2240..2254,2261..2266,2276..2278) /gene="Cyp4d2" /locus_tag="Dmel_CG3466" /gene_synonym="4d2; CG3466; Cyp4D2; CYP4D2; Cyt-P450-4D2; Dmel\CG3466; EG:152A3.4; P-450; P450" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:410721" misc_feature order(1244..1246,1829..1834,1844..1846,2039..2041, 2045..2047) /gene="Cyp4d2" /locus_tag="Dmel_CG3466" /gene_synonym="4d2; CG3466; Cyp4D2; CYP4D2; Cyt-P450-4D2; Dmel\CG3466; EG:152A3.4; P-450; P450" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:410721" ORIGIN 1 tcaaactaga aaaatctata tagtgtacct ctcgaaccga caagcgggta caaatgtgat 61 tgatattaaa cttgtacaca taatatctga gttattatat caaatcgatg gtttcattga 121 tgacttcaac taactattta ttcaaattgt taacagatat tttgagttga tatctttatg 181 gcttgtccac tgcagtatga gatccaatgt ttacctccaa tctaagggta agcatgacga 241 gtgaaattga taagggctct caactgcctg gtaatcatta ctaagcaaat tcttaaactt 301 gcactctttt taatagtata taagtggggg caatgaatct gggaacgtga atcacaaatt 361 tacgatatct tcgataggct agttcacctt caccttcacc tttgacactg ttcgcttagt 421 gataagagga tatggattta gctactgtta ttcagtaaat aaacgggcat atgtacaatt 481 catgatgata aattggaaat agcagggtat atcacttaaa tacccctttc aaatgttctg 541 atagaacttg tttacaagtt cccaatttac catataatga aaacgggcta gctccaattc 601 gttataccac ccacgatggt taggcattag cttaaattac ccaactaagc attacctctc 661 aacaaaatga ttgtgcgtca tcgtgacaag gctataaact ccattcgtaa atggttcgtc 721 cgattttctt acctccagct gcccgctgca gaatgcagat tacctgaggc ggtttagttc 781 tcttagacag cagactctct tacagctttc agctttcagc tagcgtatta gtattcagat 841 tacgaagctt atattattta tagtatcgtt cagtagaacg gcgtttctcg ttcgacgcac 901 aatgctgggt gttgttgggg tgctcctcct ggtggcgttc gccacactgc tgctgtggga 961 tttcctctgg cgcaggcggg gcaatggtat attgccgggt ccgcggccac ttcccttcct 1021 gggcaacctg ctcatgtatc gcggtctaga tcctgaacaa ataatggact ttgtcaagaa 1081 gaaccagcgc aagtacggtc gcctttacag ggtgtggatt ctccaccagt tggccgtctt 1141 ctccacggat ccccgagaca ttgagttcgt cttgagcagc cagcagcata taaccaagaa 1201 taatctgtac aagctactta actgctggct gggcgatgga ttgctgatga gcacgggcag 1261 gaagtggcat ggacgcagaa agatcatcac gcccaccttc cacttcaaga ttttggaaca 1321 gttcgtcgag atattcgacc aacaaagcgc cgtaatggtg gagcagcttc agtcgcgcgc 1381 cgacggcatg actcccatta acatctttcc ggtgatttgt ctcactgccc tggatataat 1441 cgcagaaact gcaatgggca caaaaatcaa tgcccaaaaa aatcccaatc tgccctatgt 1501 ccaggctgtc aatgatgtca ccaacatctt gattaaacgt tttatccacg cttggcagcg 1561 ggtggactgg attttccggc taacgcagcc aacagaagct aaacgccagg acaaagctat 1621 caaggtaatg cacgacttta ccgagaacat tatccgtgag cggcgtgaaa cgctggttaa 1681 caactcgaag gaaacaaccc cagaagagga agttaatttc ttgggccaaa agcgacggat 1741 ggctctgctg gatgtgctgc tgcagtccac aatcgatggc gccccgttga gcgatgagga 1801 tatccgcgaa gaggttgaca cgtttatgtt cgagggccat gacacgacta cctcggcgat 1861 ttcattctgt ttatatgaaa tctcaaggca tccggaggtc caacagcgtc tgcagcagga 1921 gatccgcgac gtcctcggcg aggatcgaaa gagcccagtt acccttcgtg atcttggtga 1981 gctgaagttt atggagaacg taattaagga gtcgctgcgc ctgcacccgc cagtgcccat 2041 gatcggtcgc tggttcgccg aggatgtgga aatacgtggc aagcatattc cagcaggcac 2101 caactttacg atgggcatct ttgttcttct tcgtgatcct gagtacttcg agtctcccga 2161 tgagttccga cctgaaagat tcgatgcgga tgtcccgcag attcatccgt atgcgtacat 2221 tcctttctcc gctggaccaa gaaactgtat cggccagaag tttgccatgc tggaaatgaa 2281 gagcaccgtc agcaagctgc tccggcactt cgagctgctg cccttgggtc ctgagccccg 2341 ccactcgatg aacatcgtcc tgcggtcggc caacggcgtt catcttggcc tgaaaccgcg 2401 cgcctaagga attcattctt gtgggtctat ccagctctat ttgcatagaa taaacgtgta 2461 tacaagt