Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_001297870 2021 bp mRNA linear INV 26-DEC-2023 C (CG4313), mRNA. ACCESSION NM_001297870 VERSION NM_001297870.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2021) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2021) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2021) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2021) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2021) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2021) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2021) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2021) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2021) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2021) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2021) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2021) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2021) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2021) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2021) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2021) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2021) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2021) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2021) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2021) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2021) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2021) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2021) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2021 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2021 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /map="2C7-2C8" /db_xref="FLYBASE:FBgn0025632" /db_xref="GeneID:31169" CDS 515..1552 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="CG4313 gene product from transcript CG4313-RC; CG4313-PC" /codon_start=1 /product="uncharacterized protein, isoform C" /protein_id="NP_001284799.1" /db_xref="FLYBASE:FBpp0309106" /db_xref="GeneID:31169" /db_xref="FLYBASE:FBgn0025632" /translation="MVAGTWITTFSIMIPTWRGVWGIFGLDVSIGSCSIMHDRYGRSP KEFLFIAAFMVPCICIVICYARIFLLVRKAAIRAGTAGKTNVSDVTPSSAPQHQIQAM ATPKKPEKVTTSSGEANEPIAGRPFVVEENLAYIDDNASTDSLPISYSIRRRDQDQQP PPVDANVVLKEREKERDRDQEKVSLGRSQTQLEMGKTHGKNPITTSLRTTSFTRFSPR KSHYASMGNTSNASSIYPGRMSAKDRRLLKMILVIFVWFVICYLPITVAKIWKSATEV HWFNIAGYLLIYLTTCINPLIYVLMSSEYRRAYWNLLRCHGSPDTQKQRNQANAKRKH LESNRQVKATT" misc_feature <515..1441 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="seven-transmembrane G protein-coupled receptor superfamily; Region: 7tm_GPCRs; cl28897" /db_xref="CDD:475119" misc_feature 515..562 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320338" misc_feature 638..709 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320338" misc_feature 1253..1321 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320338" misc_feature 1343..1420 /gene="CG4313" /locus_tag="Dmel_CG4313" /gene_synonym="CG 4313; Dmel\CG4313; Dmel_CG4313; EG:22E5.10" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320338" ORIGIN 1 agaatagaaa tgcaaaatgg agacgtgaat gtgcgccaat ttcaccgctg ccggcggcaa 61 cctcggcctc aaatcgcaaa cgccgtcgcc gagaatcgag cggttaggct gctgaaccgt 121 gaatcccaag accaaacgga accagaattg ggcgaaatgc aaatggaagt gcaacttact 181 tgcagccagt ggcttttgat gcgccgcaag taattgagtc catcccatca tcacaaagag 241 acgcgacgcg gtaattggca ttcgcaagaa gaagcatttc gcgaaacaac agctgacagc 301 gtggtgagaa agcgattgcg gggggcgaag aactggtttg tctgtgttcc tcgcttcgaa 361 tggatgccgc ccatttatta tccagaaaat tgccagagga aactatgcaa ccacacacac 421 aaacacacac acacatgcac acgacccagg aaccgaaaag tttttcattt caaaaatgcc 481 ggagagaatt taccagcgac gatatttggc tttgatggta gccggcacat ggatcaccac 541 gttttccata atgataccca cctggcgggg cgtatggggt atctttggct tggacgtcag 601 catcggctcg tgttccatca tgcatgatcg gtatggtaga tcccccaagg agttcctctt 661 catcgccgcc ttcatggtgc cgtgcatctg catcgtgatc tgttatgccc gaatcttcct 721 gctggtgcga aaggcggcca ttcgcgcggg aaccgctggc aagaccaatg tcagcgatgt 781 gactcccagc tccgcgccgc agcatcagat tcaagccatg gccacaccaa agaagccgga 841 gaaggtgacc acgtccagcg gcgaggcgaa cgaaccgatc gcaggacgac cctttgtggt 901 ggaggaaaac ttagcgtata tcgatgacaa tgcttcgacg gacagtctgc cgatctcgta 961 cagcatacgg aggagggatc aggaccagca gccaccgcct gttgatgcca atgtggtgct 1021 caaggagcgg gagaaggaaa gggatcggga tcaggaaaag gtcagcctgg gacgcagtca 1081 aacgcaacta gagatgggca aaacccatgg aaagaaccct atcactacat ccctgcgcac 1141 cacctccttc acacggttta gcccgcggaa atcccactac gcctccatgg gcaatacctc 1201 aaatgcatcc tctatttacc cgggaaggat gagtgccaag gaccggagat tgcttaagat 1261 gatactggta atcttcgtgt ggtttgtaat ttgttatttg cccatcacgg tggccaaaat 1321 atggaaaagc gccaccgagg tgcactggtt caacattgct ggctatctac ttatctactt 1381 gaccacctgc atcaacccgc tgatctacgt gttgatgagc tccgaatacc gaagagctta 1441 ctggaacttg ctgcgctgcc atggctctcc agatacccag aagcagcgga atcaggccaa 1501 tgcaaagcga aagcacctgg agtccaatcg gcaggtgaag gccacgacgt gactccgaca 1561 gatgccttaa caccttcatc gtcctccgtc ctagcgggat atgatatatg tgtgccatat 1621 ggtagtaata cgatgggaga agtacccaaa tgtcatgttg aatgatctgc ggtaagaaaa 1681 aattccttga tcccctggtg attatagtgc ctccaaaaaa gatttctagt cacatgatcc 1741 ggccggtcgt cccttccacg cacacacgaa aacacagatc acccatatat atctatatct 1801 atatctatat aatgtaggaa ctccagaagt atattgcatt ttataccaaa tgactttaat 1861 atctggttta catttgaatt ccatgtttaa gaacaatcga tgtttgttta aattttgttt 1921 tttttttctt tgcttgtcgc taattattgt accaatacat aatagatata tccttatatg 1981 gatacgccct ttctatgccc ccaataaatg cttcgaataa t