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LOCUS NM_001297855 2672 bp mRNA linear INV 26-DEC-2023 mRNA. ACCESSION NM_001297855 VERSION NM_001297855.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2672) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2672) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2672) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2672) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2672) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2672) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2672) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2672) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2672) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2672) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2672) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2672) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2672) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2672) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2672) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2672) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2672) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2672) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2672) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2672) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2672) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2672) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2672) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2672 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2672 /gene="rush" /locus_tag="Dmel_CG14782" /gene_synonym="CG14782; Dmel\CG14782; EG:80H7.5" /note="rush hour" /map="2B1-2B1" /db_xref="FLYBASE:FBgn0025381" /db_xref="GeneID:31105" CDS 639..1589 /gene="rush" /locus_tag="Dmel_CG14782" /gene_synonym="CG14782; Dmel\CG14782; EG:80H7.5" /note="CG14782 gene product from transcript CG14782-RB; CG14782-PB; rush-PB; rush hour" /codon_start=1 /product="rush hour, isoform B" /protein_id="NP_001284784.1" /db_xref="FLYBASE:FBpp0308661" /db_xref="GeneID:31105" /db_xref="FLYBASE:FBgn0025381" /translation="MVDRLVNSEANTRRIASVENCFGSSGVPLAMQGRVLVGEGVLTK MCRKRPKSRQFFLFNDILVYGNIVIGKKKYNKQHIMPLEEVSLESIADNQTYRNGWYI RTTTKSFVVFAATSTEKQEWMAHINKCVEDLLRKSGKKPVENHAAVWVPDTDASVCMH CKKTQFTFIQRRHHCRNCGAVVCAGCSAKKFLLPQQSTKALRVCDACYERLKHVPSSL GSGEDSAAATGAASGNKLNTTAGDSSNDEDSDEETASPGGESHDEPRFYGDNSVLSAV EDSSTITSPSSATTGSLEAPQVTPSVQSSPAAVATTGSHC" misc_feature 657..1025 /gene="rush" /locus_tag="Dmel_CG14782" /gene_synonym="CG14782; Dmel\CG14782; EG:80H7.5" /note="Phafin2 (also called EAPF, FLJ13187, ZFYVE18 or PLEKHF2) Pleckstrin Homology (PH) domain; Region: PH_Phafin2-like; cd01218" /db_xref="CDD:269927" misc_feature 1080..1262 /gene="rush" /locus_tag="Dmel_CG14782" /gene_synonym="CG14782; Dmel\CG14782; EG:80H7.5" /note="FYVE domain found in protein containing both PH and FYVE domains 1 (phafin-1), 2 (phafin-2), and similar proteins; Region: FYVE_PKHF; cd15717" /db_xref="CDD:277257" misc_feature order(1083..1085,1092..1094,1149..1166,1170..1175, 1242..1250) /gene="rush" /locus_tag="Dmel_CG14782" /gene_synonym="CG14782; Dmel\CG14782; EG:80H7.5" /note="putative phosphatidylinositol 3-phosphate binding site [chemical binding]; other site" /db_xref="CDD:277257" ORIGIN 1 gtatttctcc aagtattgct gccagcccca aaacctctcc tgtgcccaaa cacgagaccc 61 aaattcaagg gccgtacggc aactatccaa gaacgcccca gttctccagt gcagcagccc 121 caggtcggga atccgacgct cgacaaacaa taacacgggc ggtgggcaga gcgagacgga 181 gcgagctcag tttgtttttg ttgctgtggt gtgagtgagt catgacgttt cggacggcgt 241 agaaaagcca gttacagtca accgtcgaac attgcataaa gcgggagctg ttgccctgca 301 ttccggaacc aggatccgcc agtcgcccca cttcctcacc gtttgccagg acctgcaaca 361 gctgcgccca gtccgcacac accgaagcac gcacgtacac acacacacac atttctggag 421 gagctgtggc accgagtgtc acaccataca cacacggcgc gagcgcacgc acaccactgc 481 agcaggcagt ctgtcgtcac agttggctac atttcgactc ggattcggac tcggatcgag 541 ctagctgagc agcaactttc gccgcactcg aatcgaagtt aagcccaaac caaaagcaaa 601 agccaaaccc aagccgagcc caagcgccta ttatcgtcat ggtggaccgt ctggtcaact 661 cggaggccaa cacgcgccgc atcgcctccg tggagaactg cttcgggagc tcgggcgtgc 721 cgctggcgat gcaaggtcgc gttctggtgg gcgagggcgt gctgaccaag atgtgtcgca 781 agcggcccaa gtcgcgccag ttcttcctgt tcaacgacat cctggtgtac ggaaacatag 841 tgattggcaa gaagaagtac aacaagcagc atatcatgcc gctggaggag gtctcgctgg 901 aatcgattgc cgacaaccag acgtacagaa acggctggta catccgcacc accaccaagt 961 cgtttgtggt gtttgcggcc accagcaccg agaagcagga gtggatggct cacatcaaca 1021 agtgcgtgga ggacctgctg cgcaagagcg gcaagaagcc ggtggagaac cacgccgccg 1081 tttgggtgcc cgacaccgac gccagcgtct gcatgcactg caagaagacg cagtttactt 1141 tcatccagcg ccggcatcac tgccgcaact gcggcgctgt tgtctgcgcc ggctgctcgg 1201 ccaagaagtt cctgcttccg cagcagagca ccaaggcgtt gcgcgtctgt gacgcctgct 1261 acgagcgctt gaagcacgtg ccaagttccc ttggctctgg cgaggactcg gcagcggcta 1321 ccggcgctgc ctccggcaac aagctcaaca caacagccgg cgacagctcc aacgatgagg 1381 actccgacga ggagactgcc tcccctggtg gcgagtcgca cgatgagccg cgcttctacg 1441 gggacaacag cgtgctatcc gccgtcgaag actcctcgac gataacctcg ccctcctccg 1501 ccaccactgg cagcttggag gctccccagg tgacaccgag cgtccaaagc tccccggctg 1561 ccgttgcgac gacgggcagc cactgttgaa cggaccacat agcgaatgat tatgattatg 1621 gtagatatcg cagaaaagct ctcacccacc cacaacgcat atcccgatac cttgtagaca 1681 cgaatcgcgg tgtgacgaag tctccttgaa catgcccaac atagccactg tacatttgaa 1741 caaccgacga ttcccgtcat cttcattgca agaccttcgg acccaatttc ggatctttca 1801 ttatacctat gcgttagata aaggacgtgc aaaatttgag gcttatcgag ttctaagttg 1861 ggagagtcta gaatagaacg ttgctcgtga ctgcgacctt gcagtggctc cgttttggtt 1921 ttttattctt ctcgttttac attttccgcg aattccgctg agcgcgatag ccttatcagc 1981 caagtggctg cgacggttgc tgctgctcta ttattcgttg gcaaacaaac ggtctgatga 2041 tgtgagatgt ttcccatatc tgctcacaag cagcccagcc ctgccctacc cagcccagtc 2101 caaatgccgg cttatcgttc tgaaactccc gtcgtgactc agcggtacag agcagccgat 2161 agggttagat ggccattgag agcccatttt tgcctccggg cgttgaatga gtcaggcgga 2221 cagtcatcca tgcatctctc cgagtggcca gagacaaagc aagacgaaca acggaagcga 2281 tgcgagcagg aggagattaa ggagctgcgc aagatgacgg cattcaaggc tcgtccgaat 2341 ccatttaaat agtgctcgac ggaaccaatc gactaccaaa cgtttgatag ccctgtccaa 2401 atttaaatga agtgaagtcg atgctacaca taatcgtgtt taccgatgca tagttttacc 2461 agattaacac aatttttgtc tcttaacatt aacattactt ttacgcatat atcgttcccg 2521 tttttggcgg ataagaacca ctaaaatcgt atgtttggcg agaggataaa ctatatggat 2581 atgtatacaa cataagcaat ttgcaattgc gatcattaac tgttttctat ttgtacaaag 2641 cccaaaaaac aataaattaa tactgtaaat tg