Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_001297846 3635 bp mRNA linear INV 26-DEC-2023 variant E, mRNA. ACCESSION NM_001297846 VERSION NM_001297846.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3635) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3635) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3635) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3635) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3635) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3635) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3635) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3635) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3635) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3635) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3635) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3635) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3635) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3635) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3635) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3635) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3635) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3635) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3635) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3635) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3635) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3635) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3635) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3635 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3635 /gene="ssx" /locus_tag="Dmel_CG3056" /gene_synonym="anon-EST:Posey102; cg3056; CG3056; Dmel\CG3056; EG:132E8.1; Ssx" /note="sister-of-Sex-lethal" /map="2A1-2A1" /db_xref="FLYBASE:FBgn0024987" /db_xref="GeneID:31086" CDS 162..1493 /gene="ssx" /locus_tag="Dmel_CG3056" /gene_synonym="anon-EST:Posey102; cg3056; CG3056; Dmel\CG3056; EG:132E8.1; Ssx" /note="CG3056 gene product from transcript CG3056-RE; CG3056-PE; ssx-PE" /codon_start=1 /product="sister-of-Sex-lethal, isoform E" /protein_id="NP_001284775.1" /db_xref="FLYBASE:FBpp0308821" /db_xref="GeneID:31086" /db_xref="FLYBASE:FBgn0024987" /translation="MSNADKMQDQEHDDEQSSDIEGSGDNVGRDDGTDDDDDSNGNMQ QENGDGGNGGDGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQ DMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVR NKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGR PRGVAFVRYNKREEAQEAIKALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQIGGGN GGGGGGPPHMGPGGPMHPPHHHNNHHHNNHHNPHMPPHHHQPQHPHQHPQHHPQLHHM QHHHPNNHNNNHPNNHHHNNNNNNHHNMGGPHPHHMQQMHPMGMNMGMGVNMGMGMGM GMPIHGGGGGGGGGGGGGGGGNFHHMAHRGRSNRTTRSQKPHPYNHAQKFI" misc_feature <387..977 /gene="ssx" /locus_tag="Dmel_CG3056" /gene_synonym="anon-EST:Posey102; cg3056; CG3056; Dmel\CG3056; EG:132E8.1; Ssx" /note="sex-lethal family splicing factor; Region: sex-lethal; TIGR01659" /db_xref="CDD:273740" ORIGIN 1 ttccattgta tatcgtttgg aaacgcaaga agtgcacaaa actcgctgct ttccggtgca 61 gtttgtgaag aagtttgcta aaaactcgtg gcgccaactg cgacgcaaac acgcaagaaa 121 cccagacaaa caggagctat caaggcttga cacagaaggt catgtccaac gcggataaga 181 tgcaggacca ggagcacgac gacgagcagt cctccgacat agagggatcc ggcgacaatg 241 tgggccgtga tgacggcacc gacgatgacg acgacagcaa cggcaacatg cagcaggaga 301 atggagatgg cggcaacggt ggcgacggcc aggagcactc tggcgacgag gagcaacacc 361 acagccagga caacgagggc aacgataact ccgcaggcca acagcagcaa atgcagcaag 421 tggaccgaac cagcgccacc aatctgatca tcaattactt gccacaggac atgaccgacc 481 gcgaactgta caacctcttt agcggctgcg ggcccatcaa cacctgcaag ataatgcgcg 541 acttcaagac cggatatagc ttcggctacg gcttcgtgga ctacaaaacg gagtcggact 601 cggaggacgc catccagaag ctaaatggct tctatgtgcg caacaagcga ttaaaggtgt 661 cgtatgctcg accgggtggg cagtccatta aggatacgaa tttgtacgtc atcaacctgt 721 cgcgaaacat caacgacgac atgctcgacc gcatcttctc gccctatggc ctgattgttc 781 agcgaaacat cctgcgggat aagctcactg gacgaccgcg cggcgttgct tttgtgcgtt 841 acaataagcg cgaggaagct caagaggcga tcaaggcgct gaacaacacg gtgccggagg 901 gcggatccca gccaatctgg gtacgactcg ccgaggaaca cggcaaggcc aaggcggccc 961 agtttatggc ccagatcgga ggtggcaatg gtggcggagg cggtggtccg ccccacatgg 1021 gcccaggtgg accgatgcac ccacctcatc accacaataa tcaccatcac aacaaccacc 1081 acaatccgca tatgccgccg catcatcatc agccgcagca tccacaccag catccgcagc 1141 accatccgca gctgcaccac atgcagcacc accatcccaa caaccacaac aacaatcacc 1201 ccaacaacca ccatcataac aacaacaaca acaaccacca caacatgggc ggcccgcatc 1261 cgcaccacat gcagcaaatg cacccgatgg gcatgaacat gggcatgggc gtaaacatgg 1321 gaatgggcat gggcatgggc atgcccattc acggaggcgg cggtggtggt ggtggcggcg 1381 gcggtggagg cggtggtggt aacttccacc acatggcgca cagaggtaga tcaaatagaa 1441 caacacgatc tcaaaaaccg catccatata accatgcaca gaaatttatt taaacgccat 1501 taatttcttt acacgatatt agctgcatct cacaggtgaa gtgttcatgc tgccattgcc 1561 gatttgcagc cgattcccca gccagccgca tcccgtaggc aatggcattt gccacagccc 1621 caacaagaac agcagattcc gtttaagccg ccgcccgcaa gcctccagaa caaccatcag 1681 atatattgcg cattcggtgg cagatcccgt tcccactccg actacctagt gccgctctac 1741 tttccagccc ccgcccatcc atcagttgtt tccatctcct cgccagctgc gtcactttcg 1801 gcctacccag ctgttttggc cgtgtatgtt ccggtatatg tcacggttcc ggtctctctt 1861 cctgttacca tgaacagagc cagtccacaa gcttaaagtg agtgcagacg gaggcggcgg 1921 aggcggtggc cacatggtag aagcgagtag aaatagattg agtgcaatcg gaggagggaa 1981 gaggagatat tacccagaag cgatatccaa tagtagccaa ctctctcgct ctctatgtgt 2041 atgtatgtat cttgctatcc atatatgtat atccatatca gagagccagg attggttgag 2101 accatacgat ataacccgaa accacactgg ccaggaatag caaatccaag cattggcagc 2161 aagaggcaaa gcaaaggtgc acggcagaca taggcagtac cacaagaaca ctatcacaga 2221 attaagcaga gcaaattaaa gatgcatagc gtgtattaag atgtacgaaa taatgttcca 2281 aagttaacca gcctacacaa tccccaacaa cacacacaca cacacacata aagacggtcg 2341 gagtcgaatc cttgatcgaa ccacataaga aaaaattcca atgagtttgt atgagcaaca 2401 tacaaagccc caaacgcaaa ccatcagcca ctcaagacga gacgagaacg caaccaaaac 2461 tcaaatataa ctttcctgca ctcatctcca gttcacgaaa caatcttcgc tcttggtgga 2521 ttgcgaattg taaatgaatt gagtaactgc acggatgcaa agccccaaga tgtggcgact 2581 attccggccg gacactgtga gacggacgtt acacacacgg atatatagag agacgaacct 2641 tatgacaaca gacagaagac gcttgctctg aatagatggt taatttgtag acttataagg 2701 aacgtcgaca gcgagggttc gttcgcgtca cttgcttttt actacattat aaataaatta 2761 ttgatgtact accaacaaac caagaacaag aacaccacac tatacaaaca cctatatatt 2821 agataatata tatgaatgat gtataaatac ccgaacttcg ggtaaacttc caacagaaac 2881 ccgacaagaa gatggctgaa tatgaaataa acttgaaatt ttccaaccag catacccgtg 2941 agacccagag gtccgaaatt tttttttttt agtattgata atctctaaac gtaaatccta 3001 gtctcgtagc aatatcatag ttaaggtgac ttttttttca gaataaactt aaagcacgaa 3061 agaaatacat gtatttaaac cttaaatcct aaagtttata ataaacgaac acaaattgaa 3121 ttcttgagtc tgcgagcgag atggtgcgat gcagcctcag cgaaagagag cgagagagat 3181 gatacagatt tgaggtacag tcagcacagt acagtgcgga tcagagctta agttgacgat 3241 atactattgt tgtaaattga tgttaggcta agcaaataaa tagttaaaat gttcaatttt 3301 cgcttagctg aatcctgatc gtcgtaaaaa cgcatttaca cgaacattat atactagtca 3361 ttaagcggtt ctatttgaca ggtgaaaaca agaagctgtg gcagcctttt actacagaaa 3421 ctaaaaaaga aaaatacaaa gcttgacata tacacgcata tttgtgaaca aactgaattt 3481 taccatacat ctttgagaat tttaggacag tattcttgat aatctatatt gaatgttgat 3541 ctacacttaa cgttgcacaa aagaggtatc tttctgacct tctatgcgcg tggagtggat 3601 ccaaaaaatc aacttggtgt aataaatgtg tattt