Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_001297845 3096 bp mRNA linear INV 26-DEC-2023 variant C, mRNA. ACCESSION NM_001297845 VERSION NM_001297845.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3096) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3096) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3096) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3096) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3096) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3096) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3096) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3096) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3096) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3096) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3096) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3096) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3096) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3096) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3096) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3096) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3096) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3096) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3096) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3096) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3096) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3096) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3096) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3096 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3096 /gene="ssx" /locus_tag="Dmel_CG3056" /gene_synonym="anon-EST:Posey102; cg3056; CG3056; Dmel\CG3056; EG:132E8.1; Ssx" /note="sister-of-Sex-lethal" /map="2A1-2A1" /db_xref="FLYBASE:FBgn0024987" /db_xref="GeneID:31086" CDS 162..665 /gene="ssx" /locus_tag="Dmel_CG3056" /gene_synonym="anon-EST:Posey102; cg3056; CG3056; Dmel\CG3056; EG:132E8.1; Ssx" /note="CG3056 gene product from transcript CG3056-RC; CG3056-PC; ssx-PC" /codon_start=1 /product="sister-of-Sex-lethal, isoform C" /protein_id="NP_001284774.1" /db_xref="FLYBASE:FBpp0308819" /db_xref="GeneID:31086" /db_xref="FLYBASE:FBgn0024987" /translation="MSNADKMQDQEHDDEQSSDIEGSGDNVGRDDGTDDDDDSNGNMQ QENGDGGNGGDGQEHSGDEEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQ DMTDRELYNLFSGCGPINTCKIMRDFKLTLPSALYARQRNRPDIASATASWTTKRSRT RRTPSRS" misc_feature <387..>548 /gene="ssx" /locus_tag="Dmel_CG3056" /gene_synonym="anon-EST:Posey102; cg3056; CG3056; Dmel\CG3056; EG:132E8.1; Ssx" /note="sex-lethal family splicing factor; Region: sex-lethal; TIGR01659" /db_xref="CDD:273740" ORIGIN 1 ttccattgta tatcgtttgg aaacgcaaga agtgcacaaa actcgctgct ttccggtgca 61 gtttgtgaag aagtttgcta aaaactcgtg gcgccaactg cgacgcaaac acgcaagaaa 121 cccagacaaa caggagctat caaggcttga cacagaaggt catgtccaac gcggataaga 181 tgcaggacca ggagcacgac gacgagcagt cctccgacat agagggatcc ggcgacaatg 241 tgggccgtga tgacggcacc gacgatgacg acgacagcaa cggcaacatg cagcaggaga 301 atggagatgg cggcaacggt ggcgacggcc aggagcactc tggcgacgag gagcaacacc 361 acagccagga caacgagggc aacgataact ccgcaggcca acagcagcaa atgcagcaag 421 tggaccgaac cagcgccacc aatctgatca tcaattactt gccacaggac atgaccgacc 481 gcgaactgta caacctcttt agcggctgcg ggcccatcaa cacctgcaag ataatgcgcg 541 acttcaagct tacactcccc tctgctttgt atgcccgcca acggaacaga ccggatatag 601 cttcggctac ggcttcgtgg actacaaaac ggagtcggac tcggaggacg ccatccagaa 661 gctaaatggc ttctatgtgc gcaacaagcg attaaaggtg tcgtatgctc gaccgggtgg 721 gcagtccatt aaggatacga atttgtacgt catcaacctg tcgcgaaaca tcaacgacga 781 catgctcgac cgcatcttct cgccctatgg cctgattgtt cagcgaaaca tcctgcggga 841 taagctcact ggacgaccgc gcggcgttgc ttttgtgcgt tacaataagc gcgaggaagc 901 tcaagaggcg atcaaggcgc tgaacaacac ggtgccggag ggcggatccc agccaatctg 961 ggtacgactc gccgaggaac acggcaaggc caaggcggcc cagtttatgg cccagatcgg 1021 aggtggcaat ggtggcggag gcggtggtcc gccccacatg ggcccaggtg gaccgatgca 1081 cccacctcat caccacaata atcaccatca caacaaccac cacaatccgc atatgccgcc 1141 gcatcatcat cagccgcagc atccacacca gcatccgcag caccatccgc agctgcacca 1201 catgcagcac caccatccca acaaccacaa caacaatcac cccaacaacc accatcataa 1261 caacaacaac aacaaccacc acaacatggg cggcccgcat ccgcaccaca tgcagcaaat 1321 gcacccgatg ggcatgaaca tgggcatggg cgtaaacatg ggaatgggca tgggcatggg 1381 catgcccatt cacggaggcg gcggtggtgg tggtggcggc ggcggtggag gcggtggtgg 1441 taacttccac cacatggcgc acagaggtag atcaaataga acaacacgat ctcaaaaacc 1501 gcatccatat aaccatgcac agaaatttat ttaaacgcca ttaatttctt tacacgatat 1561 tagctgcatc tcacaggtga agtgttcatg ctgccattgc cgatttgcag ccgattcccc 1621 agccagccgc atcccgtagg caatggcatt tgccacagcc ccaacaagaa cagcagattc 1681 cgtttaagcc gccgcccgca agcctccaga acaaccatca gatatattgc gcattcggtg 1741 gcagatcccg ttcccactcc gactacctag tgccgctcta ctttccagcc cccgcccatc 1801 catcagttgt ttccatctcc tcgccagctg cgtcactttc ggcctaccca gctgttttgg 1861 ccgtgtatgt tccggtatat gtcacggttc cggtctctct tcctgttacc atgaacagag 1921 ccagtccaca agcttaaagt gagtgcagac ggaggcggcg gaggcggtgg ccacatggta 1981 gaagcgagta gaaatagatt gagtgcaatc ggaggaggga agaggagata ttacccagaa 2041 gcgatatcca atagtagcca actctctcgc tctctatgtg tatgtatgta tcttgctatc 2101 catatatgta tatccatatc agagagccag gattggttga gaccatacga tataacccga 2161 aaccacactg gccaggaata gcaaatccaa gcattggcag caagaggcaa agcaaaggtg 2221 cacggcagac ataggcagta ccacaagaac actatcacag aattaagcag agcaaattaa 2281 agatgcatag cgtgtattaa gatgtacgaa ataatgttcc aaagttaacc agcctacaca 2341 atccccaaca acacacacac acacacacat aaagacggtc ggagtcgaat ccttgatcga 2401 accacataag aaaaaattcc aatgagtttg tatgagcaac atacaaagcc ccaaacgcaa 2461 accatcagcc actcaagacg agacgagaac gcaaccaaaa ctcaaatata actttcctgc 2521 actcatctcc agttcacgaa acaatcttcg ctcttggtgg attgcgaatt gtaaatgaat 2581 tgagtaactg cacggatgca aagccccaag atgtggcgac tattccggcc ggacactgtg 2641 agacggacgt tacacacacg gatatataga gagacgaacc ttatgacaac agacagaaga 2701 cgcttgctct gaatagatgg ttaatttgta gacttataag gaacgtcgac agcgagggtt 2761 cgttcgcgtc acttgctttt tactacatta taaataaatt attgatgtac taccaacaaa 2821 ccaagaacaa gaacaccaca ctatacaaac acctatatat tagataatat atatgaatga 2881 tgtataaata cccgaacttc gggtaaactt ccaacagaaa cccgacaaga agatggctga 2941 atatgaaata aacttgaaat tttccaacca gcatacccgt gagacccaga ggtccgaaat 3001 tttttttttt tagtattgat aatctctaaa cgtaaatcct agtctcgtag caatatcata 3061 gttaaggtga cttttttttc agaataaact taaagc