Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NM_001297838 2801 bp mRNA linear INV 26-DEC-2023 B (CG11380), mRNA. ACCESSION NM_001297838 VERSION NM_001297838.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2801) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2801) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2801) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2801) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2801) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2801) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2801) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2801) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2801) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2801) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2801) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2801) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2801) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2801) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2801) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2801) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2801) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2801) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2801) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2801) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2801) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2801) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2801) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2801 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2801 /gene="CG11380" /locus_tag="Dmel_CG11380" /gene_synonym="Dmel\CG11380; EG:BACR42I17.7" /map="1E4-1E4" /db_xref="FLYBASE:FBgn0040359" /db_xref="GeneID:31065" CDS 386..2095 /gene="CG11380" /locus_tag="Dmel_CG11380" /gene_synonym="Dmel\CG11380; EG:BACR42I17.7" /note="CG11380 gene product from transcript CG11380-RB; CG11380-PB" /codon_start=1 /product="uncharacterized protein, isoform B" /protein_id="NP_001284767.1" /db_xref="FLYBASE:FBpp0311615" /db_xref="GeneID:31065" /db_xref="FLYBASE:FBgn0040359" /translation="MRLALILGTLSAIVCLASSLSQSEASGSKGNGFPKKVTTLKKRP TKTPTTVPISISRATTLKPSKPRVKIGTSATTKSPTKAPALTETFGNLPADDLEFIKE LDKQFKLHGNKIKIKVERDNSTSSGGKNSKRTIEGDLGYGYSHPGYDYTPPKFMFYPY SQHDIPSGFALPQPHPEEQEEEAHQPAMQHHHNHEQVTSVTIEPSYSYELKPQTSYET QPQHTAPEQPQIDLPQDEAESPSGAGGSSGHGGYQEPVIVLRIPGPAKYAAHLQTLLQ QYLEIRAAQYLSLLQEADQQQQQQQHQHVDPSQQYGPPEPATYHQEVSYAHQLAPTPA PVQYAPIDDVYQSYKGRHQQQLQLQQQQYEPQQYYAPMDYQQPTQFYYAQPQSHLQQQ PQLYLIAMAQPETEPEPQPQQHHHQQHHHHLQQQQQQQQPIYVPESDPPTGPSGGPEQ EPEADHSLPITENNPRPTHTKVIFNPYPYQQQQHQPQQQTTNIEEHQHQPEGERPFNY HAHAIKMRQGKRAAKPEPADGDVGPSSGDKGLQQIREYVREKLGAEMGSAVEYKTTQL LEG" ORIGIN 1 ctccaactcc gaagccgata ttccagcttg atgcaacccg aagaccaagt tgttatgctg 61 tgcttgcgat ataaaaaccg cgagcatcgc cagcgccatc cgcagtaaga ggcgcgactt 121 ttgaacgcta gcaccgctcc gattccgatt ccgactacga atctgagacg aaaatcaaaa 181 ccaaattcgt atagacacta taaccaacat aacttaaacc caccagcccg gccgtgtacc 241 cttggtattt tttgtttttg tggttctcga agacacaaat gtattgaaaa gtgcatatat 301 tattacatat aacatataac gtcaatatca aattcggatt ttgtgaaaaa gtcgctgtgc 361 atgcgcattg atacctggaa tcgccatgag attagcgtta atattgggca ctcttagtgc 421 tatagtgtgc ttggccagca gcttgagcca gtcagaggcg agtggctcaa agggcaatgg 481 atttcccaaa aaggttacca ccctgaagaa gcgaccaaca aaaacgccga ccacagttcc 541 gatttccatc agcagagcaa ccactttgaa gcccagtaag ccacgcgtga agatcggcac 601 atcggcaacc accaagagcc ccacgaaagc accggcctta accgagacat ttggcaatct 661 gccggcggat gacctggaat tcattaagga gctggacaag cagttcaaac tgcacggaaa 721 caagatcaag atcaaggtgg agagggataa ttccacgagt agcggcggca agaacagcaa 781 gaggaccatc gagggggatt tgggatacgg ctactcgcat cctggctatg attacacgcc 841 gcccaagttc atgttctatc catactcaca gcatgatatt ccctcgggct ttgcccttcc 901 acagccacat ccggaggagc aggaggagga ggcacaccag ccggcaatgc aacatcatca 961 caatcacgag caagtgacca gcgtgaccat tgagccctcg tactcctacg agcttaagcc 1021 ccagaccagc tatgaaaccc aaccgcagca cacagctccc gagcagccgc agattgatct 1081 gccccaggat gaagcggaaa gtcccagtgg tgcaggtggt tccagtggcc acgggggata 1141 tcaggagccc gtcattgtct tgcgtattcc aggacccgcc aagtacgccg cccatttgca 1201 gacccttctc cagcaatatc tggagatcag agcggcccag tacctcagct tgctccagga 1261 ggccgatcag cagcaacaac aacagcagca tcagcatgtg gatccttcgc agcaatatgg 1321 accaccagaa ccggccacct accatcagga agtcagctac gcccaccaac tggcacccac 1381 gccggcaccc gtccagtacg cacccatcga tgatgtctac cagagctaca agggtcgcca 1441 ccagcaacag ctgcagctgc agcagcaaca atatgagccg caacaatact acgcgcccat 1501 ggactaccag cagcccacac agttctacta cgctcagccc caatcccatt tgcagcagca 1561 gcctcagctc tatctgatag caatggccca gccggaaacg gaaccggagc cgcaaccaca 1621 gcagcaccat catcagcagc accatcatca tcttcagcag cagcagcagc agcagcaacc 1681 aatatacgtt ccagaatctg atccaccgac gggtccttca ggtggtcctg aacaggaacc 1741 ggaggcggac cacagccttc ccataacgga aaacaaccca cgacccaccc acaccaaggt 1801 catttttaat ccgtacccct accagcagca gcagcatcaa ccgcaacagc agaccaccaa 1861 catcgaggag caccagcacc agcctgaggg cgaacgcccc ttcaactacc acgcccatgc 1921 gatcaagatg cgccagggca aaagggcggc caagccggaa cccgcggatg gggacgtggg 1981 tcccagttcg ggcgacaagg gactccaaca gatcagggag tatgtgaggg agaaactggg 2041 cgctgaaatg ggttcggctg tcgaatacaa gacgacacag ctgctcgagg gctgaggtct 2101 ggataaatgt tcagatgttc gaaggcatgg aaactcattt gaccgaacgc actatctctg 2161 cctggatgaa ctaaaccaat ttttaaactt ggcaatcttc aaacgatttt atcaaaggtt 2221 ttttcggatg ccttagaatt ctagaattaa attttaaatc gcttacgcac gttttctatg 2281 tatatatcca ggcaagccat ctttaaaaca aattcaaaca tccgtacatt atgaatatgg 2341 ggatcaagtc cagcaagaca gtaaaattcc agtgagtgcc atgcccacgt tcactcgtat 2401 tcttaacaca caatttgtgg ttgcttcttg tgcctgatat ccgctcatta gtatttattc 2461 caagctagag gagcagaacg atcccggggt gatcctccag ctccaaatct catccaacac 2521 ctacccgcaa tccctgagct acacagccaa ggcatacttt tggccggaaa agagggcgcc 2581 taaagatagg catagttttc ttttcttagc gaagaggtgc tgccgggaca cattcgcttt 2641 tcattatttt gtacgacgtt tttttttatg ttgtttatat tgttaaccaa gaaaatgtgc 2701 tgctgatcat gtgtgcaata tttagtctta atgtgcttct tgatttacct atattatgta 2761 cttgtatttt tgtatgatta aaccgaaaag aaattaattt g