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LOCUS NM_001297822 1650 bp mRNA linear INV 26-DEC-2023 transcript variant G (Dredd), mRNA. ACCESSION NM_001297822 VERSION NM_001297822.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 1650) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1650) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1650) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 1650) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 1650) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 1650) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 1650) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 1650) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 1650) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 1650) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 1650) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 1650) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 1650) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 1650) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 1650) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 1650) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 1650) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 1650) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 1650) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 1650) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 1650) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 1650) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 1650) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1650 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..1650 /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /note="Death related ced-3/Nedd2-like caspase" /map="1B12-1B13" /db_xref="FLYBASE:FBgn0020381" /db_xref="GeneID:31011" CDS 244..1566 /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /EC_number="3.4.22.-" /note="CG7486 gene product from transcript CG7486-RG; CG7486-PG; Dredd-PG; death-related ced-3/neural precursor cell expressed developmentally downregulated 2 (NEDD2)-like protein; Ced-3-like/Nedd2-like protein; death caspase-2; drosophila caspase; death related ced-3/Nedd2-like protein" /codon_start=1 /product="death related ced-3/Nedd2-like caspase, isoform G" /protein_id="NP_001284751.1" /db_xref="FLYBASE:FBpp0309082" /db_xref="GeneID:31011" /db_xref="FLYBASE:FBgn0020381" /translation="MTRSDFPQSDLLIKFAKSRPETWRRHLVEALCIIGARKVLRRLG FCWQELRMHYLPHIAGITLHVHPLLKSLYRMCEELSLVQSGRLLLDVREKVESQQAGD PLRFYDPAYLEIFLLDWLTRRSIKLGDINAAGSDVQLLVGHLKSNGLQAQANLLKDTI ISNAPEPDAAGTAAMAVKQEIESDNQQSYCSTQIDALKLTRENAGIALIINQQKFHRN VSRDNMKFLSPDPLRRRDGTDVDKERLIEVFSSMGYNVEAYDNVDHMGIIERIRSACD RSLVRDSLVVFILSHGFEEAVYASNSIAMKITDIEDLLCSYDTLYYKPKLLIIQACQE KLVHKKKPNELFRIDVTTVSPDQHIDMLRAMSTVNGYAALRHTQTGSWFIGSLCDAID RRSASEHIADILTIVTNEVSKKRGSNDESMVPNVKSTFRQHVYFPPRL" misc_feature 835..1557 /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /note="Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide...; Region: CASc; cl00042" /db_xref="CDD:444667" misc_feature order(946..948,1117..1119,1231..1233,1252..1254, 1357..1374,1384..1389) /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /note="substrate pocket [chemical binding]; other site" /db_xref="CDD:237997" misc_feature order(1114..1116,1237..1239) /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /note="active site" /db_xref="CDD:237997" misc_feature order(1255..1257,1312..1317,1336..1338,1345..1347, 1354..1356,1423..1425,1447..1449,1465..1467,1504..1506, 1519..1524,1528..1530,1537..1542) /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:237997" misc_feature order(1258..1260,1309..1311) /gene="Dredd" /locus_tag="Dmel_CG7486" /gene_synonym="anon-1BCa; CASP8_DROME; CG7486; Dcp-2; DCP-2; dcp-2/dredd; Dcp-2/Dredd; DCP-2/DREDD; Dcp2; DCP2; dDredd; Dedd; Dmel\CG7486; dredd; DREDD; Dredd/DCP-2; EG:115C2.9; Redd" /note="proteolytic cleavage site [active]" /db_xref="CDD:237997" ORIGIN 1 cagcgagtgc aatttatcgg ccatttccta aagtgaaaca tttttgtata ttcccgatcg 61 ccatggccgg atcaaacctg ttgattcatc tagacaccat cgatcagaac gatctgatct 121 acgtggaacg tgacatgaac tttgcccaaa agaaccttcg ttttcttcta ggtgggcctc 181 tgctttctgc tttatggcga cgaccactcg gatgccacct acattctgca gaaacttttg 241 gccatgacac gatcagactt cccgcaaagt gatctactca taaagttcgc caagtcccgg 301 ccagaaacct ggagaagaca tctcgtggag gccctgtgca ttattggggc ccgcaaggtg 361 ctccggagac tgggtttctg ctggcaggag ctgcgaatgc actacttgcc gcatatcgct 421 gggatcacgc tgcatgtcca tcctctgttg aagagcctct acaggatgtg tgaggagttg 481 tcgttggtgc agagtggccg cttgctccta gatgttcgcg aaaaggtgga gagccagcag 541 gcaggagatc cacttcgctt ctacgatccc gcgtacctgg agatcttttt gctggactgg 601 ctgaccagaa ggagcataaa gttaggggac ataaatgccg caggcagcga tgttcagctg 661 ctggtcggcc atttgaagtc caacggtctg caggcgcaag caaatttgct caaagacacc 721 atcattagta acgctccgga gccagatgcg gctggcactg ctgcgatggc agtcaagcaa 781 gagattgaat cggataacca gcagtcgtac tgttccacac aaatagatgc tcttaagttg 841 acccgggaga acgcaggaat cgccttgatt atcaaccagc agaagtttca ccggaatgtt 901 agcagggata atatgaaatt tctgtcgccc gacccactgc gtagacggga tggcacggat 961 gtggataaag aacgactaat cgaggtgttt tcctcgatgg gatacaatgt ggaggcgtac 1021 gacaacgtgg atcacatggg catcatagag cgcattcgca gtgcgtgcga tagatcgctc 1081 gtgcgcgatt ccctagtggt cttcatcctg agccacggct tcgaggaggc cgtctacgca 1141 tccaacagca tcgccatgaa gatcacggat atcgaggact tgctctgcag ctacgacacc 1201 ctgtactaca aaccgaagtt gctaatcata caagcctgcc aggagaagct tgtccataaa 1261 aagaagccaa atgagctctt taggatagac gtgaccaccg tgtcgccgga ccagcacatc 1321 gacatgctgc gggccatgtc cacggtaaat ggatatgctg ctctgcgcca cacccaaaca 1381 ggtagctggt ttatcgggag cctgtgcgat gccatcgatc gccgttccgc cagtgaacac 1441 atcgccgata tcctgacgat tgtcaccaac gaagtgtcta aaaagcgagg cagtaatgac 1501 gagtccatgg tgccgaatgt taaaagcaca tttcgccagc acgtgtactt tccacctcgt 1561 ctgtgatttt ggtttttaac gttagcgcag ttgtacgtcc actcaaattg ctctataaag 1621 gtaaaaatac atttttataa agtttagtgt