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LOCUS NM_001297813 3092 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_001297813 VERSION NM_001297813.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3092) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3092) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3092) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3092) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3092) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3092) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3092) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3092) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3092) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3092) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3092) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3092) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3092) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3092) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3092) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3092) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3092) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3092) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3092) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3092) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3092) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3092) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3092) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3092 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3092 /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /note="silver" /map="1B5-1B7" /db_xref="FLYBASE:FBgn0004648" /db_xref="GeneID:30998" CDS 443..1744 /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /EC_number="3.4.17.-" /note="CG4122 gene product from transcript CG4122-RJ; CG4122-PJ; svr-PJ; carboxypeptidase E; pointed; DmSilver; chlorotic; carboxypeptidase D; silver; dwarp" /codon_start=1 /product="silver, isoform J" /protein_id="NP_001284742.1" /db_xref="FLYBASE:FBpp0309132" /db_xref="GeneID:30998" /db_xref="FLYBASE:FBgn0004648" /translation="MLFFCLALIIGCAVGEYSEVRVIQEEDNFLESPHYLKNEEIGDL FSQLAKDYPDLAQTYTIGKSLEDRPIYALALSAPTGESKNGDLLRPMVKLVANIQGDE AVGRQMVLYMAEYLATHYDGDPKVQALLNLTEIHFLPTCNPDGFAKAKEGNCESLPNY VGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALVNWIVSKPFVLSANFHGGA VVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGITN GAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAH IGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQT SAPQQVRVTNDNQEALRLDFKLAPVETNFDGISSFYSPYYF" misc_feature 545..1438 /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /note="Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain I subgroup; Region: M14_CPD_I; cd03868" /db_xref="CDD:349440" misc_feature order(737..739,746..748,929..931,956..961,1085..1090, 1106..1108,1118..1120,1271..1273,1283..1285,1289..1291, 1349..1351) /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /note="active site" /db_xref="CDD:349440" misc_feature 1448..1684 /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /note="Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain; Region: Peptidase_M14NE-CP-C_like; cd11308" /db_xref="CDD:200604" ORIGIN 1 catctgatcg cagccgagtg gcaacagtgg tcgctgctgc gttcgcgtac tttcgtgact 61 tcatttgcga ttttatttat attctccgtg ttgcgaataa aatgctggcg agaagatcat 121 tgcgaaaaaa gtgtacgaaa agaaagtgca ataactgcag ctctattgtg cgcgcatctg 181 ggtgtgcgta gatctttgca tcggtgtgtc ggtgtttttt tacgtttgtg tgcgtggcgt 241 gcccacattt gtggcacaag tttaaaaatt ggcactaaga aagttcaaga aagtggttct 301 ggggaaaata gttcattcat tcagcatcca ctttctgttg aaagtggcgc gcctgcgttt 361 tgtgtcttaa tcatcgcatt gctgcctgcc tacgtgtaca gaaactgcga gcgctccggg 421 agagtccccg agaatcccca aaatgttgtt tttctgccta gccttgatca tcggctgcgc 481 agtcggagaa tacagcgaag tccgggtcat ccaggaagag gacaacttcc tggagagtcc 541 tcactaccta aaaaacgagg aaataggaga tcttttcagc cagctagcca aggattaccc 601 cgacttggcg cagacctata caataggcaa atccctggag gatcgaccca tctacgccct 661 agccttaagt gcacctaccg gggagtccaa gaatggagat ctcctaaggc caatggttaa 721 actggtggcc aacatacaag gcgatgaagc cgtgggtcgt cagatggttc tctatatggc 781 cgaatacctg gccacccact acgatgggga cccgaaggtc caggcgctac taaatctcac 841 cgaaatccac ttcctgccca cctgtaaccc cgatggattc gccaaagcca aggaaggcaa 901 ctgcgagtcg ctgcccaact atgtgggtcg tggcaatgcg gccaacatcg atttgaatcg 961 cgatttcccc gatcgcctgg agcagagcca tgtccaccag ttgcgcgccc agtctcgtca 1021 gccggaaaca gcagccctgg taaattggat cgttagcaaa ccgtttgtgc tctccgccaa 1081 tttccatggc ggagctgttg tggccagcta tccctatgac aactccttgg ctcacaatga 1141 gtgctgcgag gagagtttga ctccggatga tcgggtcttc aagcagctgg cccacaccta 1201 ttctgacaac catccgatta tgagaaaggg caacaattgc aacgatagct tctcgggagg 1261 tatcaccaac ggagcccact ggtatgagtt gtccggtgga atgcaggact ttaactatgc 1321 gtttagcaac tgtttcgagc tgaccatcga gttgtcgtgc tgcaagtatc cggcagcaag 1381 cactttgccc caggaatggc agcggaacaa ggcatccctg ctgcagctgc tgcgccaggc 1441 acatatcggc atcaagggcc tggtgaccga tgccagtggc tttccaatag ccgatgccaa 1501 tgtctacgtg gctggactag aggagaaacc catgcgcact tccaaacgtg gcgaatactg 1561 gaggcttttg accccgggac tctatagcgt gcacgcctcc gcttttggtt accagaccag 1621 tgccccgcaa caggtccggg tgaccaacga taaccaggag gccttgcgcc tggactttaa 1681 gcttgcgccc gtcgagacga actttgatgg tattagcagt ttttacagtc cctattattt 1741 ctagagaggg atgcaacgga aatacctata tatatgcgca tatatattat attgggcagt 1801 tccaaaatgc tatacatata tccacattta gcgatgcata gtattctctg ctctcctgcc 1861 ctctccgcac tatccttgta ctatatatgt tatctccgcc attcccgaat ccagatatac 1921 aaccattttg catgttcatt tgctccctct catttagaac ctttatttgt ttaccgcgag 1981 agctagcaga aaataaacaa tgttggctgt cgtgtggatg aattggtttg gttttgtctc 2041 gaatcttttg tacatacact tttttaattt atcttttaaa aacttctgtt tcatttttat 2101 gtttttttcg cattttcata cgcttatatg ccagcctatg ttccttccac gccattactt 2161 cagacgcgca catatttagt ggatgcttga tttgtatata gagaacgtat taagaacaaa 2221 cacgaagaaa tagcaaacca aataacgaaa tgaaataaat taaggaaata agcgaattgt 2281 acttaggcaa tatgcagaaa ttggcccact tatggtcatc gaatgacaca ttcccaatac 2341 gaatcggtta tagctttatc aatattcccc ttatcttccg cacaccctaa aacatattgt 2401 caagtatttt agcaacgatg caaaaaaact atgataaatc caaagcccac tacatgaacc 2461 tactgctaaa tatactgtat actaaataga ctgtatgcgc actctatggt tagtcctatc 2521 tggaatgatt gttgagcatt tatccaaaaa caaaagaacc tacatttgat agtgaggcga 2581 aattattatc aattccggtc cgacgcgtgc tcacgcatgg cttttgatat atactataga 2641 cgagaacagg ttacaatcaa atgaagaata ttgcaatggc gagaaccttg cgaagtataa 2701 ataaaatatt aatgttcgct tgctgcgttt tattttcatt cattgctctt taattcggtc 2761 tctaaatgaa ttttttgttt tcgagcacat tattggtgtt ttcaaaatct ggtgcagtgt 2821 tttattaatc actcgttttt gaaaaaaatg agattttatt tgagatcatt ttcaattcat 2881 taatcatcga attcaggaca tattttttct ttattctgat ctttagcaat tttactttct 2941 ttttggtttc gcagtacgac ttagtttttc catttttctt ttgtttcaaa ggccttatat 3001 gtagcctaac ggtggagtca tggttaggga cgttcaagaa actcccagtc acatctaaat 3061 gaaatttaaa atgtatcttt cactaagtac ct