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LOCUS NM_001297805 3428 bp mRNA linear INV 26-DEC-2023 E (CG3777), mRNA. ACCESSION NM_001297805 VERSION NM_001297805.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3428) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3428) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3428) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3428) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3428) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3428) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3428) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3428) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3428) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3428) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3428) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3428) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3428) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3428) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3428) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3428) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3428) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3428) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3428) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3428) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3428) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3428) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3428) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3428 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3428 /gene="CG3777" /locus_tag="Dmel_CG3777" /gene_synonym="BEST:CK01670; CK01670; Dmel\CG3777; EG:125H10.1" /map="1A1-1A5" /db_xref="FLYBASE:FBgn0024989" /db_xref="GeneID:30979" CDS 260..2899 /gene="CG3777" /locus_tag="Dmel_CG3777" /gene_synonym="BEST:CK01670; CK01670; Dmel\CG3777; EG:125H10.1" /note="CG3777 gene product from transcript CG3777-RE; CG3777-PE" /codon_start=1 /product="uncharacterized protein, isoform E" /protein_id="NP_001284734.1" /db_xref="FLYBASE:FBpp0310562" /db_xref="GeneID:30979" /db_xref="FLYBASE:FBgn0024989" /translation="MLLKVFLLVFIATHHLVDSAGPLSNIASESKPKSFEEILPSAVP FETSHKHPGAGEWVEGFQTSHKISIRATDSADYSMNLLPTKERPELNPVLSALINEDV MKSIEAKRAIEEEELAEVRREIEQAAVLELAQKRGFTTTETPALLLTTLPTAGKKLDN LDEDIVLDPHEDFINQNFALESAGSENSKKSRIEIKKGPNGQDYEYEYVYYYEEDDDS SKVDPSAEPDTRGKTRYTNIERSTTATPSGNSLQSDKAKGRSSDTSEDIEAERLPMIT RFPSRGKNIEVPPTAALDSLEIAAERKKISVKRPSLELVDSATFNTDEKQTKAARKGE NELKPVIAIEQEEAARKKMQQVKEEQARKEKETEMSIDQEDFEQTTPSMEKAALDLYA ILTNENLNNEQTTVIPDTVGSEGFTTLATETASTDEDEAGVMTTLINEISSSTSTTTT AATTTTTTTTTEPPTTTSTTTTTTAAPSLFGGRRAGLSGLGGRNRFKLTRAEGGSTTT STTEASVAAETNKTGRNRFSRPSIGGRSRPGARTTTAPDATSVAAPDAEEGIVVAKEV KPVSTSFARGRPRNRFSLRVSTTTARPSEESPAEDDAPAESSSTTTRSTLRGRPGLGL RGRSRTTTTKAPASSEGAEAVEPNATASSEDVKSGLISPSTGESGRPSRFNIHRAGSN RLLSRGKLGRSGVSTEAPKESQTAEDSAAESSSHLNDVKEEQMSAGEFSEKTNEAGDS AAVVPAAPVSGLNRLRTRPRLNALTHKTDAVKPKASAAPAPAPRKINPLLAKRRLQLG ATSTTESPAEEEHLALDSSAEQSDKEESFAGGSNETGGEGPGKPEHETTEATEATTKQ QPRGLGLLGQRRRLPLRKPGTIL" ORIGIN 1 tgccatttca cgttcagcta gcagcgaaat cgaaagtgac tgctccccga agatccgaag 61 ataaaataaa tttagagagg tcttcaaaaa aaaaaaaagt tcatggtact gccacaagat 121 cctcccggca gaagctgaag cacgcagttg actttcaaaa gtgtcattaa aatctatgaa 181 aaatcgcagt tagcgaaaaa gttgctgtag cagcattgaa gtcgcctagg agcaacaaga 241 acaacaatca catctcaaaa tgcttctcaa ggtattttta ctggtcttca tcgccaccca 301 ccacttggta gactcagcgg gtcccctttc caatatagcc agcgaaagta aaccaaaatc 361 gttcgaggag attttgcctt cggcggttcc ctttgagacc tcacacaaac atccgggtgc 421 cggggagtgg gtggagggat ttcaaacctc ccataaaata agcataaggg ccaccgattc 481 cgctgactat tcgatgaatc tgctgcctac taaagagcga cccgaattga accccgtttt 541 gagtgcactt atcaacgaag atgttatgaa gagcatcgag gccaaaagag ccatagaaga 601 agaggagctg gccgaggtta ggcgtgaaat tgagcaggcc gccgtgttag agttggccca 661 gaagaggggc tttaccacta ctgagacacc tgctcttctg ttgacgactt tgcccacagc 721 tggcaagaag ctcgataact tggatgagga catagtcctg gatcctcacg aagattttat 781 caaccaaaat tttgccctgg agagtgcggg tagtgagaac agcaagaaat cccgaataga 841 gattaaaaag ggacccaatg gccaggacta cgagtacgag tatgtctatt actatgaaga 901 ggacgatgac tcaagcaagg tggatccatc tgcagagccc gacacgcgtg gtaagactag 961 atataccaat atcgagagga gcacgacggc cactccgagt ggaaatagcc tacagagtga 1021 caaggccaaa ggaagatcat ctgatacctc tgaagatata gaggctgaac ggcttccgat 1081 gatcactcgg tttcccagtc gtggcaagaa cattgaagtg ccaccaacag cagctcttga 1141 ttctttggaa atcgctgccg agcgcaagaa gattagtgtt aagcgcccca gtttggagtt 1201 ggtggatagt gctaccttca acacggatga gaaacagacc aaggcagctc gcaagggtga 1261 aaatgaatta aaaccagtaa ttgctatcga acaggaggag gcagccagaa agaaaatgca 1321 acaggttaag gaggagcagg caaggaaaga gaaggagacc gaaatgtcaa tcgatcagga 1381 ggattttgag cagaccacgc cgtccatgga gaaggccgct ctagatcttt atgccatatt 1441 gaccaatgaa aacctcaata acgaacaaac tactgtaatt ccggataccg taggttcaga 1501 gggtttcacc actttggcaa cagaaactgc aagtactgat gaggatgagg ccggtgtcat 1561 gaccacgctg attaatgaga tttcatcgag taccagcacc actacgacgg cagcaacaac 1621 caccacgact acaacaacaa cggaaccacc tacaacaacc tccaccacta caacaaccac 1681 ggctgctccc tctctttttg gtggaaggag agccggcttg agtggtttgg gcggacgtaa 1741 tcgctttaag ttaaccaggg ctgaaggtgg cagcaccacc actagcacca ctgaggcatc 1801 ggtggctgca gaaacaaaca agactggtag aaatcgtttt tcgcgcccct cgataggagg 1861 gcgttctcga cccggagctc gtaccaccac agcaccagat gccacatcag tagctgcccc 1921 tgacgccgag gagggtatag tggttgccaa ggaagtcaag cctgtcagta cgtccttcgc 1981 acgaggaaga cctcgcaacc gcttcagctt gcgcgtctca accacgactg cgcgacccag 2041 cgaggaatct ccagctgaag atgacgcccc cgccgaatct tcatcaacga ctacaagaag 2101 cacattgagg ggtcgtcccg gacttggatt acgtggacgc agtcgtacaa ccactacaaa 2161 ggcacccgct agttcagagg gtgccgaagc ggtagagcct aatgccactg ctagttccga 2221 agacgtcaag tccgggttga tttcgccttc taccggggaa tcagggcgtc cgtcccgttt 2281 taacattcac cgcgctggta gcaatcgtct gttatcccgc ggaaaactgg gaagatcggg 2341 agtaagcacg gaagcaccca aggaaagtca aactgccgag gattccgccg ccgaaagcag 2401 tagtcacctc aacgacgtca aagaggagca gatgtccgct ggcgagttta gcgaaaagac 2461 gaacgaagca ggtgattccg ctgccgtcgt tccagcggct cctgtatccg ggttaaatcg 2521 tcttagaact cgaccacgtc tcaacgccct aacgcataag actgatgcgg ttaagcctaa 2581 ggcatccgca gcccccgccc ccgcgccaag gaagattaat cctctgttgg caaagcgacg 2641 actccaactg ggagccactt ccaccacaga gtcccccgct gaggaggagc atttagcgct 2701 ggactcctcc gcggagcagt ccgacaaaga ggagtcgttt gccggaggaa gcaacgagac 2761 gggcggagaa ggccccggaa agccggagca tgaaactacg gaagcgacgg aggcaacaac 2821 taagcagcag ccccgcggtc ttggactttt aggacagcgt cgtcgtctgc cgctccgcaa 2881 acccggaacg atcctgtaaa acaacaaatt gccatctacc cgtttgaatc ctgtaataat 2941 aacttgccca gatttgctgc agcatactcc tagagttggg ctgggtggcc cacacaagcg 3001 ataataacat ttaacaattg tttgatatat gtactttttt ttaagttttt ttctcctcgt 3061 acttgccttc caaaaactcg ttagctttgt acacatacgc ctttaattaa aatactgata 3121 gatgcgtacc acttacgtca ttagaaaaag tcaccaaaag gaaaaatatg gacgacacaa 3181 gaacgaggag atctaagcca ctcgtagacc actaagcaca aaatacccga aaaatataac 3241 tgatatgatt gccaactacc ctgcgactat gtaaacccaa ccttcccccc tcctttaccc 3301 tcttattcaa atcgacgcgt gtgtagaaga tacacttatt atattttttt tctgagatac 3361 aattataaac acaaaaacga cttttaacta tatattaaat aaaaacaaaa ggaaaaacat 3421 aataattt