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LOCUS NM_001272603 3426 bp mRNA linear INV 26-DEC-2023 C (Pdcd4), mRNA. ACCESSION NM_001272603 VERSION NM_001272603.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3426) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3426) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3426) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3426) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3426) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3426) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3426) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3426) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3426) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3426) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3426) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3426) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3426) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3426) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3426) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3426) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3426) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3426 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3426 /gene="Pdcd4" /locus_tag="Dmel_CG10990" /gene_synonym="CG10990; Dmel\CG10990; pdcd4" /note="Programmed cell death 4" /map="12B4-12B10" /db_xref="FLYBASE:FBgn0030520" /db_xref="GeneID:32337" CDS 698..2227 /gene="Pdcd4" /locus_tag="Dmel_CG10990" /gene_synonym="CG10990; Dmel\CG10990; pdcd4" /note="CG10990 gene product from transcript CG10990-RC; CG10990-PC; Pdcd4-PC; programmed cell death 4 ortholog" /codon_start=1 /product="programmed cell death 4, isoform C" /protein_id="NP_001259532.1" /db_xref="FLYBASE:FBpp0304100" /db_xref="GeneID:32337" /db_xref="FLYBASE:FBgn0030520" /translation="MEVESNNKRATNGGRHFTPPSDSDSKESSVERELNEEIEAVELN GSGGGGHSNGHVKKLMAVEDGRIKRKAKRLIQRQNSGSGGSANQTNGNGAAGAGGAHG ASVMPLGINRIMPSPGGYVVPHRRWKNSRRSRTINRGRGLPKKGGGGGKGVWGLPGSE ALAEVYEDENDPNYDSECNDRNVELREVITEITREEFFKLAEPIVLEYYEHGDPHEVA LSFDEILQAPMREHVTSILVEIAMDHKDSQREMTSVLISDLYGRVITGKDIEKGFNML LANLPDLVLDTPEAPIMLGNFMARAVADDCIPPKFVAKSGEELRHLGLGEHAEQALRR ADSLIYKHVWAHLDNVWGMGGPLRPVKTITMQMELLLKEYLSSRDVAEAQRCLRALEV PHYHHELVYEAIVMTLESLSQTTEEAMCELLKQLDLTCLVLPAGMEQGFLRAFDDMAD IVLDVPLAYIILDRFVERCNRAGFLTDKIINNVPSRGRKRFVSEGDGGHVKPTTFTMR D" misc_feature 1286..1621 /gene="Pdcd4" /locus_tag="Dmel_CG10990" /gene_synonym="CG10990; Dmel\CG10990; pdcd4" /note="Domain in DAP-5, eIF4G, MA-3 and other proteins; Region: MA3; smart00544" /db_xref="CDD:214714" misc_feature 1784..2125 /gene="Pdcd4" /locus_tag="Dmel_CG10990" /gene_synonym="CG10990; Dmel\CG10990; pdcd4" /note="MA3 domain; Region: MA3; pfam02847" /db_xref="CDD:397128" ORIGIN 1 ctctggttca gtcgagttga gttttcacgg cgtgaacaac agtgtgcgtt attggttcct 61 tattctgcgg ttcttcaatc ctttttgttc caatcctact gaaaaagaaa tcaaaagttc 121 acatcgttaa gcggcaaaaa caacaaaagc gaaggtgaat aaggcataaa aaacagcaca 181 cgcaactgaa tagttgtggg tgtgcgagtg tgtgtatgcg cgtgtgaagg agccttttag 241 taaacactca cacacttgtg tatttttttt ctgtgagaca caagatattt gagtgcattt 301 tttgccattt gccttgccaa cccctctccc ccgcacgcat ataagaagag aaagagaggc 361 agggaaaaaa taaaggagcc cacgaagaaa agcaacaact attaaacagg ctcctcatcg 421 tataaaagca gcgcagccgc cgtcaacgtc aactgcagtg ggccaacgtc gttgcagtcg 481 tgtcgttagt ttttgttctt gttgcagcag cagcatcaaa gacagaagta gagagagcga 541 gcgaaacagc cggagagaca aaacaaaaag cacttagaaa agaagccacg cacctggtgc 601 cagagtacaa aacccaaaca tctacaatat ccgagctgtg cattccaagg agataacgag 661 gaacgtatat atcgaagagt ttgagaacat cgtcaggatg gaagtggaat cgaataacaa 721 acgcgccacc aacggcggcc gtcacttcac tccaccgtcg gactccgatt ccaaggagag 781 ttccgtcgag cgggagctga acgaagagat cgaggcggtg gagctaaatg ggagtggtgg 841 tggcggccac tcgaacggcc atgttaagaa gctgatggct gtcgaggatg gcaggattaa 901 gcgtaaggcc aagcggttaa tccaaagaca gaatagtggt tctggcggca gtgccaatca 961 aactaatggc aatggagctg ctggcgctgg tggagcacat ggagcaagtg taatgccgct 1021 gggaatcaac agaattatgc cgtcgcccgg tggctatgtg gtgccacatc gacgctggaa 1081 gaatagccgg cgttcgcgaa ccatcaatcg tggtcgagga ctgcccaaaa agggtggtgg 1141 cggcggcaag ggcgtctggg gattgcccgg ttccgaggct ctggccgagg tctatgagga 1201 cgagaatgat cctaactacg atagtgagtg caacgatcgt aatgtggagc tgcgcgaggt 1261 gatcactgag ataacacgcg aggagttctt taagctggcg gagcccattg tcttggagta 1321 ctacgagcac ggggatccgc atgaggtggc actgagcttt gatgagatac tgcaggcacc 1381 gatgcgcgag cacgtcacca gcattctcgt ggagatcgcc atggatcaca aggattcgca 1441 gcgcgagatg acctcggtgc tgatctccga tctctacgga cgcgttatta ccggcaagga 1501 tattgagaag ggattcaata tgctgttggc caatctgccg gatctcgtcc tggacactcc 1561 agaggcgcca atcatgctcg gcaattttat ggcccgcgcc gtggccgatg actgcattcc 1621 gcccaagttt gtggccaagt cgggggagga gctaagacat ttgggactgg gcgaacatgc 1681 cgaacaggcc cttcgccgtg ctgactcgct tatctacaag catgtgtggg cccatttgga 1741 caatgtctgg ggcatgggtg ggccactgcg tccagtgaag acaatcacca tgcagatgga 1801 gctgctgctc aaggagtact tatcatcgcg tgacgtagcc gaggcacagc gctgtctgcg 1861 tgccctcgag gtgccacact atcatcacga gcttgtctac gaggcgattg tcatgacact 1921 ggagtcactt agccagacca ccgaggaggc catgtgcgag ctgctcaagc agctagatct 1981 cacctgcctg gtgctgcccg cgggcatgga gcagggtttc ttgcgcgcct tcgacgacat 2041 ggccgacatc gttttggatg tgcccctggc ctatataata ctcgatcgct tcgtcgagcg 2101 ctgcaatcgc gccggattcc taaccgacaa gattataaac aatgtgccat cgcgcggacg 2161 caagcgtttc gtttcggagg gcgacggcgg ccacgtgaag ccgactacct tcaccatgcg 2221 tgattaaatc atagggacaa cggggacgtt atatgctgca catgcttata tgaccactgc 2281 ccccagccac ccaatgacaa ctagaggagc aacaagagag aagcaaacat taaacaaaaa 2341 caaaaaaaaa aacaccaaat tacaaaaaaa aaaaacgaaa attcatacga acgcaaagaa 2401 taaatacacc atttataaga aacaaaagac gatatgaaga atttgtcgca aacttgataa 2461 aaagaactta tcctcagaat ccagataagg acacaaacga aaaacaaaaa caagcaaaaa 2521 aaaaaaacca caaaaaaaca aacaatcaat cggaatttga tctccgttta aactatattc 2581 attattatac tacataaaca cctacaacgt atatcttacc tacatgtaac taccagcgta 2641 attcgaaagt atattttaaa tatttgttaa aaaaggagat atgagtgaaa cgatcacaaa 2701 aaaaagaaaa agaaagaaga atccagccaa aagtatgcgg ggaaccacga gcaggagcaa 2761 caggaacaga gatgggtcgc tttttgtggc taggatctca cataaaggat gcgagtgggc 2821 gtacttagca cgaccgtcat tatgccacat gaaatcaaag catattattt acatgaaact 2881 gttataggca ctcgtacaca cacactcaca cacacctctt gggttgattg aattgattga 2941 ataacttgta tttggaacga accaatgatg atgatttatg ctatcaacgc aatcaaaact 3001 ctgatgatta cacaaaacaa attccattga cttgaaattg agaaaaacat ttataatatt 3061 cctatgcgca tcgaaaacat gattttcctt aatttttttg taactttgtg tgtcagaaga 3121 ctaacataat taagcttaat tttactttat acgtatattt acccacggat tcatcttatt 3181 ctgcttgctt tttttttttt ttgattgaat aaaagctgca ttttatatga taagaaaaag 3241 actttgtttt cgccgcactt atattttaaa atgttcacac ttcatgaaga aacaaaattc 3301 gacatattct taaaaatgcg cgcccacaca tctatatata tttaatatat atatctacat 3361 atatatatat ataaactaat gtgttaaaag cagaaaatat acatcaaaaa taaaaattaa 3421 aaacat