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LOCUS NM_001272565 3566 bp mRNA linear INV 26-DEC-2023 O-acyltransferase 1 (Agpat1), transcript variant C, mRNA. ACCESSION NM_001272565 VERSION NM_001272565.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3566) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3566) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3566) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3566) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3566) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3566) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3566) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3566) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3566) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3566) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3566) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3566) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3566) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3566) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3566) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3566) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3566) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3566) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3566) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3566) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3566) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3566) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3566) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3566 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3566 /gene="Agpat1" /locus_tag="Dmel_CG3812" /gene_synonym="AGPAT; AGPAT1; AGPAT2; CG3812; dAGPAT1; DmAGPAT1/2; Dmel\CG3812" /note="1-Acylglycerol-3-phosphate O-acyltransferase 1" /map="11B16-11C1" /db_xref="FLYBASE:FBgn0030421" /db_xref="GeneID:32230" CDS 305..1336 /gene="Agpat1" /locus_tag="Dmel_CG3812" /gene_synonym="AGPAT; AGPAT1; AGPAT2; CG3812; dAGPAT1; DmAGPAT1/2; Dmel\CG3812" /EC_number="2.3.-.-" /EC_number="2.3.1.51" /note="CG3812 gene product from transcript CG3812-RC; CG3812-PC; Agpat1-PC" /codon_start=1 /product="1-Acylglycerol-3-phosphate O-acyltransferase 1, isoform C" /protein_id="NP_001259494.1" /db_xref="FLYBASE:FBpp0305378" /db_xref="GeneID:32230" /db_xref="FLYBASE:FBgn0030421" /translation="MITMTSFIELLGLFLLLMLPFLYETNHIFRYYFKFLMYYGIVSF NSIILIPAFLTRPCDVRNLLWASTWCHRVSTLIGLRWELRGKEHLAKDQACIIVANHQ SSLDVLGMFNIWHVMNKCTVVAKRELFYAWPFGLAAWLAGLIFIDRVRGEKARETLND VNRRIKKQRIKLWVFPEGTRRNTGALHPFKKGAFHMAIDQQIPILPVVFSSYCTFLND KKKILNSGRIVITTLPPVSTEGLTKDDIDVLMERVRSQMIETFKVTSAEALHRYKPIK KVGIPAASSASTSSTTTTTLASPGTAVTPVADAAVAAAAAVASSSSAYGQPPGYEAGA AKASLLKTL" misc_feature 497..1081 /gene="Agpat1" /locus_tag="Dmel_CG3812" /gene_synonym="AGPAT; AGPAT1; AGPAT2; CG3812; dAGPAT1; DmAGPAT1/2; Dmel\CG3812" /note="1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]; Region: PlsC; COG0204" /db_xref="CDD:439974" ORIGIN 1 cttgcaattt ttttttcccc ctgaactgta gtattcatca cttggtgcgc ttgtgacgtt 61 gtggtttgtt gcactcgcat aattgtcata ttaatacgtg cataaaagac gcatcgatcg 121 gaacaacaag gatatccaca cacaaaccac acacctaaaa gactgtaatc tgccttaacc 181 ataggaaagt cagagaaaga aaagccggaa gtcccataca ggatagcaaa tcgggcgaag 241 atagcagaag gcatctggat ccaggatctg aaacggttga atcactaagc ataaacataa 301 tcaaatgatc accatgactt cgtttatcga actgctggga cttttcttgc tgctgatgct 361 gccattcctc tatgagacca atcacatatt ccgatactac ttcaaattcc tgatgtacta 421 cggcatcgtg tcgttcaact cgatcatcct catcccggca ttcctcacca gaccatgcga 481 tgtccgcaat ctgctatggg cgagcacctg gtgccaccgc gtttcgacgt tgattggcct 541 gcgatgggag ctgcgcggca aggagcattt ggccaaggac caggcctgca tcattgtggc 601 caatcaccaa agctcgctgg atgtgctggg catgttcaac atctggcatg tgatgaacaa 661 gtgcacagtg gtggccaaac gagagctctt ctacgcctgg ccttttggct tggcggcatg 721 gttggctggc ctaatcttca tcgatcgtgt gcgcggcgag aaggcgcgcg aaacgctaaa 781 cgatgttaac cggcgcatca agaagcaacg tatcaaactg tgggttttcc cggagggaac 841 gcgccgcaat acgggcgcac tgcatccgtt caaaaagggc gcctttcaca tggccatcga 901 tcagcagata cccattctgc cggtggtctt ctcctcctac tgcacattcc tcaatgataa 961 gaaaaagatt ttgaattcgg gtcgcattgt gattaccacg ctgccgccgg ttagcaccga 1021 aggactaacc aaggacgaca tcgatgtgct aatggagcgt gtccgctccc agatgattga 1081 aacgttcaag gtgacgtctg cggaggcgtt gcatcgttat aagcccatta aaaaggttgg 1141 aattccagcc gcctcatcag catcaacatc atctacgaca acaacaacat tggcatcacc 1201 gggaactgct gtcactcccg ttgcggatgc ggcagtggct gccgcagctg ccgtggccag 1261 tagcagttcg gcatacggtc aaccgccggg ctacgaagcc ggagccgcaa aggccagctt 1321 gctcaagaca ctttaggcta tgcagcaatt caattcaatc caaacacaca cacacacaca 1381 gccagccaca cacactcata tccaaaaaat acgaaacacc tcatggcgta gctgaagtgt 1441 cacgttttgg gggcttttag ttggacacgt taactggcaa tcagctttat ttgggcctat 1501 ttgggaattc tatagtccac agttgtgcaa ttatcgtaca cgtgcagtat ttgttttgat 1561 attattgttt aaagtccaaa ctatgttttg tcatcatttt attgcatact tttcgtaatt 1621 tatttctctc aaaaatgact ttatgtaaga atatttgtca ttagagtatt cattttgagg 1681 cgtgtgaaaa attaataagg caatgattgt tgagtgcttc gtgcctcaag atatgaacaa 1741 agcaaagaca ctagaataat tctagttatc atatttttta atgaaattta tgaaattaca 1801 gtagttataa taatttctat tgtacttcct ttaattaatt agtatattta ttaagtcatt 1861 tgacttaaaa tgatgtaaca ttaacattaa aagtgtttca aaaaaaatat ttcgctttta 1921 aaaaattgtc agatgagaga caaattagaa ttaaacataa caaattttaa caaacaaatt 1981 taaaaaactt taaaattata atagtcaggg cgcgaatttg taaaaatttt tttattttat 2041 catattgcta ggaaattggc caaaaatacc ctaatatgta caatgtaaat tcgtttcttc 2101 gatcagaatt gatttcggcc cgaaaatcgt cttctagcac aacacgcaca catatacgcg 2161 ttctcgtctc ttgtttttac tcacacaagc aagcaaattc tatttttaga tttcttacgc 2221 tctcagcggg agtgagcgga aagagagtaa ttttggccgt caacaaaaaa gtggcatctt 2281 gttattctag tgtctttggt tataccctgt tgaatggaat cgattgattc aaaagcagaa 2341 gcgaaagctg ctgtcgattt caattttatt taattaactg aaaaaaataa gttaaaaatt 2401 gctgcttact tgtaaatacc aaatccgtac cactttaaaa caacgaatta agaaaagtat 2461 taccacttta aataatttag caatatgaat tttgatagtg cgctagtctt aactgaaaag 2521 gtcaaatccc aaataggtct atgttaacac acttttttcg aacataaatc acctgtgttt 2581 gtttgtggaa gtcaacatgt gcatcatttt gtagatttta cgcacttgca taatatttta 2641 gacacatcga aatgttaacg aaacagtgta cttgaaaagc caattccatg ttacgatttc 2701 ggctacagtc cacgcagcaa aacatccact cactttcaaa tagtttgact aattcaggca 2761 ccaaaaaaat gagtattagg agtagcaatc acaaaactgc gatcctcgac tgtcagactt 2821 taactctttt gtaggcaaca cataccaaaa agcaactaaa acagcaaacc aaaaaacatt 2881 aactctatcc cttacacgat gcaacaggaa gaacagaaga acatgtctaa ctcgaaatgg 2941 cttggattat tagggaattg ttaaaatcca agcaatttcg attaggtttt tatccgccta 3001 gattatatga tagttgcatg ttatcattta atcctgttgc cgcgtgtact tgttagatga 3061 ttacaccaaa tgatatgtaa ttaaaattaa ataaatatct aaacacatat tgtgaatgac 3121 gactaatctt gcaaacgaca ttacatactt tatgtagggc gaattctggt tgatttttac 3181 aatcgaccac ttgacgagca gttaagccag ttcttttttt tttgtttaaa acaatacgta 3241 ttttattttt acaagacatt ccctaactag gttagggttc ccatttaaag gtatttcctt 3301 actcgcttac aattgaatcc cgaaatggat tcaatgtact atttatctaa tatcacctca 3361 tggcatctaa ggaatttaag ggatctttga actaacacct acatatttgt gtattgtatt 3421 caaatatatt gtgtatctgt ctggtaaagt gttaacttaa ctttgtaaat actatgcggt 3481 ttactttaaa gacaaatcaa aggcgatagt gtgcgaaagc aaaaggaaac aattaaatac 3541 gagtataata aatatttttt tcaaat