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LOCUS NM_001272564 2547 bp mRNA linear INV 26-DEC-2023 transcript variant B, mRNA. ACCESSION NM_001272564 VERSION NM_001272564.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2547) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2547) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2547) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2547) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2547) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2547) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2547) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2547) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2547) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2547) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2547) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2547) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2547) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2547) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2547) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2547) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2547) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2547) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2547) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2547) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2547) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2547) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2547) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2547 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2547 /gene="Paics" /locus_tag="Dmel_CG3989" /gene_synonym="ade5; Ade5; AIRc-SAICARs; CG3989; Dmel\CG3989" /note="PAICS bifunctional enzyme" /map="11B16-11B16" /db_xref="FLYBASE:FBgn0020513" /db_xref="GeneID:32228" CDS 245..1531 /gene="Paics" /locus_tag="Dmel_CG3989" /gene_synonym="ade5; Ade5; AIRc-SAICARs; CG3989; Dmel\CG3989" /EC_number="4.1.1.21" /EC_number="6.3.2.6" /note="CG3989 gene product from transcript CG3989-RB; CG3989-PB; Paics-PB; AIR-carboxylase-SAICAR synthetase; ade5" /codon_start=1 /product="PAICS bifunctional enzyme, isoform B" /protein_id="NP_001259493.1" /db_xref="FLYBASE:FBpp0305933" /db_xref="GeneID:32228" /db_xref="FLYBASE:FBgn0020513" /translation="MSTTTTASKGYKLGKVIIEGKTKQVYDLPEQPGLCLLLSKDRIT AGDGVKAHDLAGKAEISNTTNGQVFRLLNEAGIRTAYVKQCGAKAFIARKCQMIPIEW VTRRLATGSFLKRNVGVPEGYRFSPPKQETFFKDDANHDPQWSEEQIVSAKFELNGLV IGQDEVDIMRRTTLLVFEILERAWQTKNCALIDMKVEFGICDDGNIVLADIIDSDSWR LWPAGDKRLMVDKQVYRNLASVTASDLDTVKRNFIWVAEQLADIVPKKDHLVVILMGS ASDISHSEKIATSCRSLGLNVELRVSSAHKGPEETLRIVREYESVMSNLIFVAVAGRS NGLGPVVSGSTNYPVINCPPVKSDNMQVDVWSSLNLPSGLGCATVLYPEAAALHAATI LGLGNFMVWSKLRVKALNNFITLKKADKELRGVRNA" misc_feature 275..1021 /gene="Paics" /locus_tag="Dmel_CG3989" /gene_synonym="ade5; Ade5; AIRc-SAICARs; CG3989; Dmel\CG3989" /note="Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase; Region: SAICAR_synt_Ade5; cd01416" /db_xref="CDD:133471" misc_feature order(293..298,302..307,311..313,317..322,347..349, 353..355,482..484,521..523,527..529,533..535,647..649, 833..835,869..874) /gene="Paics" /locus_tag="Dmel_CG3989" /gene_synonym="ade5; Ade5; AIRc-SAICARs; CG3989; Dmel\CG3989" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:133471" misc_feature order(296..298,302..313,317..319,347..349,383..385, 485..487,518..529,533..535,545..547,551..553,557..559, 569..577,641..643,647..649,665..667,821..829,833..835, 872..874,887..898) /gene="Paics" /locus_tag="Dmel_CG3989" /gene_synonym="ade5; Ade5; AIRc-SAICARs; CG3989; Dmel\CG3989" /note="active site" /db_xref="CDD:133471" misc_feature order(383..385,545..547,551..553,557..559,569..577, 641..643,665..667,821..829,887..898) /gene="Paics" /locus_tag="Dmel_CG3989" /gene_synonym="ade5; Ade5; AIRc-SAICARs; CG3989; Dmel\CG3989" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133471" misc_feature 1052..1513 /gene="Paics" /locus_tag="Dmel_CG3989" /gene_synonym="ade5; Ade5; AIRc-SAICARs; CG3989; Dmel\CG3989" /note="phosphoribosylaminoimidazole carboxylase, PurE protein; Region: purE; TIGR01162" /db_xref="CDD:273474" ORIGIN 1 acgctcagtt gctttggagc gattctttga tgcagacgaa catcggagtt tgcggattgt 61 aataatagag ccaagcggag agagcgaaaa agacagagag agagatagag agcgagagcg 121 agagggaagg caccagcgaa tatcgagcat aaagcaaagc ccgcaacacg tgaaacagcc 181 agcagccaat tgatttcaat ttcgattctt aaagtgaagt gaccaacaac gtgcgattaa 241 cgagatgtcc accaccacaa cagcatccaa gggctataag ctcggcaagg tcatcatcga 301 gggcaaaacc aaacaggtgt acgatctgcc agagcagcca ggactttgcc tgctcctcag 361 caaggatcgc atcaccgccg gcgatggtgt caaagcacat gatctggccg gcaaggcgga 421 gatctccaat accaccaacg gtcaggtctt ccggctgctc aacgaggcag gcattcgcac 481 cgcctatgtg aagcagtgcg gcgccaaggc cttcatcgcc cgcaagtgcc agatgatacc 541 cattgagtgg gtgacccgtc gcctggccac cggttcgttc ctcaagcgca atgtcggcgt 601 gcccgagggc tacaggttct cgccgcccaa acaggagacg ttcttcaagg atgatgccaa 661 ccacgatccc cagtggagcg aggagcaaat tgtctccgcc aagttcgagc taaatggcct 721 ggtgatcggc caagatgagg tggacattat gcgtagaacc acactgctgg tcttcgagat 781 tctcgagagg gcatggcaga ccaagaattg cgccctgatc gacatgaaag tggagttcgg 841 tatctgcgac gatggcaaca tagttctggc cgatatcatt gattccgatt cgtggcgctt 901 gtggccagcg ggtgacaagc gtttgatggt cgacaagcag gtgtatcgca atctggcatc 961 ggtgacggcc agcgatttgg ataccgtaaa gaggaacttc atttgggtgg ccgaacaact 1021 ggctgatatt gtgcccaaga aggatcacct ggttgtcatt ctgatgggca gtgcttccga 1081 tatatcgcac agcgagaaga tagccaccag ctgtcgatcc ctcggcctta atgtggaact 1141 tcgcgtgagt tcggcccaca agggaccgga ggaaacgttg cgcattgtcc gcgaatatga 1201 atcggtgatg agcaacttga tctttgtggc cgtcgccggg cgatccaatg gactgggtcc 1261 agtcgtttcc ggcagcacca actatccggt aatcaattgt ccgcccgtca aatcggacaa 1321 catgcaggtg gacgtgtggt ccagcttgaa tctgccatcg gggctgggct gtgccacagt 1381 tctctatcca gaggcagctg ctctgcatgc ggccaccatt ctggggctgg gcaacttcat 1441 ggtctggtcg aaattgcgtg tcaaggcgct caacaacttt atcactctca agaaggccga 1501 caaggagttg cgcggcgtgc gaaatgctta gttgctggtt atcatagctt atggtgggag 1561 atatcagcat tggatatcaa ccaggaggcc atatatagag aatccttccc tgatcattgc 1621 cgttcggcga tcatccaggg atcccataaa ggtcatcatc agatcacata ctttgttaat 1681 tcttctttct cctatttttt tttttttgaa accaaacatt tttttattag tattaggaaa 1741 gcatgacttc aacttgttgt accacgttct tgacaggtta cgaactcgaa ataacaaaaa 1801 ataaaaatta cattttaaat gttacgcact ttgagctgaa ttttttataa atataaaaga 1861 aatatagcat ggattacacg taaatgtgat tgaatgtttc tccatttttg gagtaaaaac 1921 attccctttc ttggacgcaa ctttaaaaat aattgtctga gtatggaatg ccatatctcg 1981 tcgagctcgt aattaaattt ccaattcaac tgtgtccaaa aattgtattt ctattttttt 2041 gccatttttt gtaaatttac cttaccaaaa tatgcaaaaa ttggtcaaaa aataaatttt 2101 tctaaatcct tgaaaaggtg atagggattg ttagcattgg taattagctg ctcaaaacag 2161 ttattctttt gactttgtgt tgattttgag caacgtttag aagaaatctg cattcgttcc 2221 ctagccaatt tttaaattga tttagtttga atttagaacc gacaataagt ttttttttgt 2281 ttatttttgc caatttttag ttcaaactaa ttagtagcat acttttgggc tgagacgatg 2341 acgatttgaa tgactaaact gttgcacttt ttaaacgtga ttcttggctc tattaaacaa 2401 aacaaaaaac gggaattagc catgtgtata gtttatatat taaaatagca tctagaatgc 2461 taaaaaaaat gtattaaaaa ccacgtttgg agaaaagaga aattgtagat aaatttccaa 2521 aaaatgtaaa taaaagagtt atttatc